Variant report

Variant	rs285760
Chromosome Location	chr15:93181495-93181496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93180068..93182597-chr15:93441905..93444737,2	MCF-7	breast:
2	chr15:93147223..93149686-chr15:93178777..93181726,2	MCF-7	breast:
3	chr15:93180406..93183251-chr15:93430441..93434489,3	MCF-7	breast:
4	chr15:93179390..93182218-chr15:93285466..93288131,2	MCF-7	breast:
5	chr15:93179227..93181968-chr15:93219677..93222839,3	MCF-7	breast:
6	chr15:93181102..93183442-chr15:93428358..93430400,2	MCF-7	breast:
7	chr15:93062742..93066323-chr15:93179954..93182328,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173575	Chromatin interaction
ENSG00000272888	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2173059	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285761	0.84[CHB][hapmap]
rs3743360	0.82[CHB][hapmap]
rs3743361	0.94[CHB][hapmap]
rs3743362	0.94[CHB][hapmap]
rs437661	0.94[CHB][hapmap]
rs58898424	0.82[EUR][1000 genomes]
rs61165177	0.81[EUR][1000 genomes]
rs9972374	1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93176000-93182000	Enhancers	Pancreas	Pancrea
3	chr15:93176000-93182200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:93176800-93182600	Enhancers	Gastric	stomach
5	chr15:93177000-93182600	Enhancers	Fetal Muscle Leg	muscle
6	chr15:93177200-93183000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:93177400-93182400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:93177600-93182600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:93178000-93188400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:93178200-93182400	Enhancers	Fetal Lung	lung
11	chr15:93178400-93182600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:93178400-93182800	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr15:93178600-93182200	Enhancers	H1 Cell Line	embryonic stem cell
14	chr15:93178800-93181600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:93178800-93182200	Enhancers	Fetal Muscle Trunk	muscle
16	chr15:93178800-93187600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:93179000-93181600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr15:93179200-93182400	Enhancers	Colon Smooth Muscle	Colon
19	chr15:93179200-93182600	Enhancers	Left Ventricle	heart
20	chr15:93179600-93182600	Enhancers	Ovary	ovary
21	chr15:93179600-93183000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:93179800-93182200	Enhancers	Placenta	Placenta
23	chr15:93179800-93182400	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr15:93179800-93182400	Enhancers	Right Ventricle	heart
25	chr15:93179800-93182400	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr15:93179800-93182600	Enhancers	Esophagus	oesophagus
27	chr15:93179800-93182600	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr15:93179800-93183000	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr15:93180000-93182400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:93180200-93181800	Weak transcription	Spleen	Spleen
31	chr15:93180200-93181800	Enhancers	A549	lung
32	chr15:93180200-93182400	Enhancers	Brain Hippocampus Middle	brain
33	chr15:93180200-93182600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr15:93180200-93182800	Enhancers	Brain Angular Gyrus	brain
35	chr15:93180200-93187200	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:93180400-93181800	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr15:93180400-93181800	Enhancers	Fetal Intestine Small	intestine
38	chr15:93180400-93182200	Enhancers	Muscle Satellite Cultured Cells	--
39	chr15:93180400-93182200	Enhancers	HSMM	muscle
40	chr15:93180400-93182200	Enhancers	HSMMtube	muscle
41	chr15:93180400-93182400	Enhancers	Fetal Intestine Large	intestine
42	chr15:93180400-93182400	Enhancers	Fetal Stomach	stomach
43	chr15:93180400-93182600	Enhancers	Fetal Kidney	kidney
44	chr15:93180400-93183000	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr15:93180600-93181600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr15:93180600-93181600	Weak transcription	Right Atrium	heart
47	chr15:93180600-93182000	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:93180600-93182000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr15:93180800-93182200	Enhancers	Brain Substantia Nigra	brain
50	chr15:93180800-93182200	Enhancers	HepG2	liver

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