Variant report

Variant	rs2857604
Chromosome Location	chr6:31525105-31525106
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:31524523..31526735-chr6:31547329..31549369,2	K562	blood:
2	chr6:31507117..31518882-chr6:31523749..31531427,29	K562	blood:
3	chr6:31524537..31528500-chr6:31546996..31550457,4	MCF-7	breast:
4	chr6:31515398..31518438-chr6:31524166..31528358,3	MCF-7	breast:
5	chr6:31524595..31526236-chr6:31590943..31592445,2	K562	blood:
6	chr6:31520347..31523947-chr6:31524604..31528715,4	K562	blood:
7	chr6:31523207..31526178-chr6:31556028..31558601,2	K562	blood:
8	chr6:31524106..31525794-chr6:31567165..31568981,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254870	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000204498	Chromatin interaction
ENSG00000234006	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000227507	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2239705	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2269476	0.88[ASN][1000 genomes]
rs2516483	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2516488	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2516490	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
2	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
3	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
4	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
5	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
6	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
7	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
9	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
10	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
11	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
12	nsv1018463	chr6:31337336-31525275	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
13	nsv538189	chr6:31337336-31525275	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
14	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
15	esv2757162	chr6:31353329-31542308	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	99 gene(s)	inside rSNPs	diseases
16	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
17	nsv432877	chr6:31412961-31528690	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases
18	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
19	nsv470809	chr6:31496915-31544189	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	76 gene(s)	inside rSNPs	diseases
20	nsv884417	chr6:31515078-31525354	Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2857604	MICB	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31515600-31525400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:31515600-31525600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:31516000-31526400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:31516000-31535800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:31516200-31525800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:31516400-31525400	Weak transcription	Right Atrium	heart
7	chr6:31516400-31526200	Weak transcription	Small Intestine	intestine
8	chr6:31516400-31526200	Weak transcription	NH-A	brain
9	chr6:31516400-31526200	Weak transcription	NHDF-Ad	bronchial
10	chr6:31516400-31526400	Weak transcription	A549	lung
11	chr6:31516400-31526600	Weak transcription	Psoas Muscle	Psoas
12	chr6:31516400-31527200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:31516400-31533200	Weak transcription	Fetal Brain Male	brain
14	chr6:31516600-31525200	Strong transcription	Fetal Muscle Leg	muscle
15	chr6:31516600-31529200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:31516800-31530800	Weak transcription	Stomach Mucosa	stomach
17	chr6:31516800-31531000	Weak transcription	Fetal Kidney	kidney
18	chr6:31517000-31525200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:31517000-31525400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:31517000-31526600	Weak transcription	Fetal Heart	heart
21	chr6:31517000-31527400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:31517400-31525400	Strong transcription	Placenta	Placenta
23	chr6:31517600-31525200	Weak transcription	NHLF	lung
24	chr6:31517800-31525400	Weak transcription	Left Ventricle	heart
25	chr6:31517800-31527200	Weak transcription	HMEC	breast
26	chr6:31518800-31525600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:31519000-31525200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr6:31519000-31525200	Weak transcription	Adipose Nuclei	Adipose
29	chr6:31519000-31525200	Weak transcription	Brain Anterior Caudate	brain
30	chr6:31519200-31525200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:31519400-31525200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr6:31519400-31525200	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:31519400-31525200	Weak transcription	Right Ventricle	heart
34	chr6:31519400-31525400	Weak transcription	Aorta	Aorta
35	chr6:31520800-31527200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:31521000-31525400	Strong transcription	Liver	Liver
37	chr6:31521000-31528000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
38	chr6:31521000-31529200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:31521200-31526000	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:31521200-31526200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:31521200-31526600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr6:31522000-31525200	Weak transcription	Osteobl	bone
43	chr6:31522200-31525600	Strong transcription	Hela-S3	cervix
44	chr6:31522600-31525200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:31522800-31525200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr6:31523000-31525200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr6:31523000-31526000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:31523000-31526200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:31523200-31525800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr6:31523200-31526000	Strong transcription	Fetal Intestine Small	intestine

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