Variant report

Variant	rs28576094
Chromosome Location	chr15:51169265-51169266
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:19)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:19 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:50967897..50968403-chr15:51168851..51169399,2	K562	blood:
2	chr15:51056114..51059435-chr15:51164290..51170662,7	MCF-7	breast:
3	chr15:51055466..51057454-chr15:51167757..51170599,2	K562	blood:
4	chr15:50977401..50979649-chr15:51165838..51169878,4	MCF-7	breast:
5	chr15:50966245..50970616-chr15:51167760..51171279,6	MCF-7	breast:
6	chr15:51167855..51170942-chr15:51171206..51172852,3	K562	blood:
7	chr15:50978415..50979112-chr15:51168650..51169362,2	MCF-7	breast:
8	chr15:51055486..51061183-chr15:51164859..51169908,7	MCF-7	breast:
9	chr15:51057661..51059465-chr15:51167793..51170787,2	K562	blood:
10	chr15:50967409..50968619-chr15:51168790..51169663,6	MCF-7	breast:
11	chr15:51169062..51169728-chr15:51200375..51201044,2	K562	blood:
12	chr15:50977735..50980671-chr15:51167535..51171424,9	MCF-7	breast:
13	chr15:50967262..50968901-chr15:51168741..51169920,12	MCF-7	breast:
14	chr15:51169074..51171423-chr15:51198294..51201877,3	K562	blood:
15	chr15:51169182..51171979-chr15:51176658..51178721,2	K562	blood:
16	chr15:51168728..51169620-chr15:51177649..51178652,4	K562	blood:
17	chr15:51169111..51169804-chr15:51177818..51178332,2	MCF-7	breast:
18	chr15:51167738..51170695-chr15:51174100..51175756,2	MCF-7	breast:
19	chr15:50977313..50978812-chr15:51169055..51169789,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138600	Chromatin interaction
ENSG00000081014	Chromatin interaction
ENSG00000092439	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13329464	1.00[AFR][1000 genomes]
rs13329482	1.00[AFR][1000 genomes]
rs13329572	0.89[AFR][1000 genomes]
rs28590740	0.89[AFR][1000 genomes]
rs28591348	1.00[AFR][1000 genomes]
rs28634419	1.00[AFR][1000 genomes]
rs28681012	0.88[AFR][1000 genomes]
rs28776322	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043805	chr15:50715572-51208891	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv542384	chr15:50715572-51208891	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv457134	chr15:50770868-51184583	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv471242	chr15:50770868-51184583	Genic enhancers ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv569396	chr15:50770868-51184583	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
7	nsv457135	chr15:50770868-51189707	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
8	nsv569397	chr15:50770868-51189707	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	nsv1047039	chr15:50782070-51187804	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
10	nsv542385	chr15:50782070-51187804	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
11	nsv457136	chr15:50789125-51294995	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
12	nsv569398	chr15:50789125-51294995	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
13	nsv1042372	chr15:50846461-51208891	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
14	nsv542386	chr15:50846461-51208891	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
15	nsv569399	chr15:50874964-51562198	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
16	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
17	nsv529339	chr15:51048579-51270372	Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
18	nsv516168	chr15:51114437-51217361	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
19	nsv428636	chr15:51154834-51298044	Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
20	esv3311782	chr15:51167104-51170190	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
21	esv3311783	chr15:51167104-51170190	Flanking Active TSS Weak transcription Active TSS Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51151200-51177400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:51163600-51176400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:51168600-51169400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:51168600-51169400	Active TSS	Duodenum Mucosa	Duodenum
5	chr15:51168600-51169400	Active TSS	Placenta	Placenta
6	chr15:51168600-51169400	Active TSS	A549	lung
7	chr15:51168800-51169400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:51168800-51169400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:51168800-51169400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:51168800-51169400	Flanking Active TSS	Liver	Liver
11	chr15:51168800-51169400	Active TSS	Brain Cingulate Gyrus	brain
12	chr15:51168800-51169400	Active TSS	Brain Hippocampus Middle	brain
13	chr15:51168800-51169400	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr15:51168800-51169400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr15:51168800-51169400	Active TSS	Colonic Mucosa	Colon
16	chr15:51168800-51169400	Active TSS	Colon Smooth Muscle	Colon
17	chr15:51168800-51169400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr15:51168800-51169400	Active TSS	Fetal Muscle Leg	muscle
19	chr15:51168800-51169400	Active TSS	Ovary	ovary
20	chr15:51168800-51169400	Active TSS	Psoas Muscle	Psoas
21	chr15:51168800-51169400	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr15:51168800-51169400	Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr15:51168800-51169400	Active TSS	HepG2	liver
24	chr15:51168800-51169600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr15:51168800-51169600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr15:51168800-51169600	Active TSS	Brain Angular Gyrus	brain
27	chr15:51168800-51169600	Active TSS	Stomach Smooth Muscle	stomach
28	chr15:51168800-51169600	Flanking Active TSS	Dnd41	blood
29	chr15:51168800-51169800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr15:51168800-51175800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:51169000-51169400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:51169000-51169400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:51169000-51169400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:51169000-51169400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:51169000-51169400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
36	chr15:51169000-51169400	Active TSS	Primary B cells from cord blood	blood
37	chr15:51169000-51169400	Flanking Active TSS	Primary B cells from peripheral blood	blood
38	chr15:51169000-51169400	Active TSS	Primary T cells from cord blood	blood
39	chr15:51169000-51169400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
40	chr15:51169000-51169400	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr15:51169000-51169400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:51169000-51169400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
43	chr15:51169000-51169400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr15:51169000-51169400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr15:51169000-51169400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr15:51169000-51169400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr15:51169000-51169400	Active TSS	Muscle Satellite Cultured Cells	--
48	chr15:51169000-51169400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr15:51169000-51169400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:51169000-51169400	Active TSS	Adipose Nuclei	Adipose

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