Variant report

Variant	rs28576265
Chromosome Location	chr15:57275852-57275853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57275197..57277151-chr15:57278136..57281602,3	K562	blood:
2	chr15:57273239..57275335-chr15:57275612..57277322,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16977181	1.00[EUR][1000 genomes]
rs16977199	1.00[EUR][1000 genomes]
rs16977218	1.00[EUR][1000 genomes]
rs16977232	1.00[EUR][1000 genomes]
rs16977235	1.00[EUR][1000 genomes]
rs16977242	1.00[EUR][1000 genomes]
rs16977244	1.00[EUR][1000 genomes]
rs16977245	1.00[EUR][1000 genomes]
rs16977253	1.00[EUR][1000 genomes]
rs16977272	1.00[EUR][1000 genomes]
rs17415738	1.00[EUR][1000 genomes]
rs2733343	1.00[EUR][1000 genomes]
rs34560099	1.00[EUR][1000 genomes]
rs41472450	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57256800-57277200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr15:57261200-57279000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:57262200-57280000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:57263800-57276000	Weak transcription	Lung	lung
5	chr15:57265400-57277000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:57269800-57276400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:57269800-57304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:57270000-57276800	Weak transcription	HSMMtube	muscle
9	chr15:57270000-57280200	Weak transcription	Fetal Brain Male	brain
10	chr15:57271200-57276200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:57271400-57276400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:57271600-57276600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:57271800-57276600	Weak transcription	NHLF	lung
14	chr15:57272000-57276800	Weak transcription	Hela-S3	cervix
15	chr15:57272200-57276000	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr15:57272200-57276600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr15:57272200-57276600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:57272200-57280600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr15:57272200-57282400	Enhancers	Primary T cells from cord blood	blood
20	chr15:57272400-57276600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:57272600-57276400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:57272600-57276800	Weak transcription	HMEC	breast
23	chr15:57272600-57278000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr15:57272800-57276800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:57272800-57276800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:57273000-57276600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:57273000-57276600	Weak transcription	NHEK	skin
28	chr15:57273000-57279400	Weak transcription	Pancreas	Pancrea
29	chr15:57273000-57280800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:57273000-57281400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:57273000-57281600	Weak transcription	Ovary	ovary
32	chr15:57273000-57283200	Weak transcription	Spleen	Spleen
33	chr15:57273000-57285800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:57273000-57307200	Weak transcription	Fetal Intestine Small	intestine
35	chr15:57273200-57276400	Weak transcription	Fetal Heart	heart
36	chr15:57273400-57276400	Weak transcription	Dnd41	blood
37	chr15:57273600-57276800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr15:57273600-57278800	Enhancers	HUVEC	blood vessel
39	chr15:57273600-57279400	Weak transcription	Small Intestine	intestine
40	chr15:57273600-57281600	Weak transcription	K562	blood
41	chr15:57273800-57276000	Weak transcription	Aorta	Aorta
42	chr15:57274000-57276800	Enhancers	NHDF-Ad	bronchial
43	chr15:57274000-57287600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr15:57274200-57276000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:57274200-57276000	Weak transcription	Fetal Thymus	thymus
46	chr15:57274200-57276400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr15:57274200-57276600	Weak transcription	Fetal Intestine Large	intestine
48	chr15:57274200-57280400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr15:57274200-57289200	Weak transcription	Fetal Muscle Leg	muscle
50	chr15:57274200-57295600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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