Variant report

Variant	rs28578258
Chromosome Location	chr8:124554912-124554913
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124554591..124557037-chr8:124776144..124778121,2	MCF-7	breast:
2	chr8:124553792..124555367-chr8:124579978..124581505,2	MCF-7	breast:
3	chr8:124553519..124555734-chr8:124689703..124692521,2	MCF-7	breast:
4	chr8:124553676..124556595-chr8:124642690..124644811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254113	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28627713	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4871384	0.92[ASN][1000 genomes]
rs4871385	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62518431	0.84[ASN][1000 genomes]
rs62521293	1.00[ASN][1000 genomes]
rs7821824	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7835433	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124554400-124555000	Enhancers	Primary B cells from peripheral blood	blood
2	chr8:124554400-124555000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:124554400-124555200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr8:124554400-124558800	Weak transcription	Hela-S3	cervix
5	chr8:124554400-124558800	Weak transcription	HSMM	muscle
6	chr8:124554400-124558800	Weak transcription	Osteobl	bone
7	chr8:124554400-124559000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:124554400-124559000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:124554400-124559000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:124554400-124559200	Weak transcription	Ovary	ovary
11	chr8:124554400-124559200	Weak transcription	Right Atrium	heart
12	chr8:124554400-124563600	Weak transcription	Aorta	Aorta
13	chr8:124554600-124555000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:124554600-124555000	Enhancers	Primary T cells from cord blood	blood
15	chr8:124554600-124555000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr8:124554600-124555000	Enhancers	Fetal Heart	heart
17	chr8:124554600-124555000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr8:124554600-124555200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr8:124554600-124555200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr8:124554600-124555200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:124554600-124555200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr8:124554600-124555200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr8:124554600-124555200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr8:124554600-124555400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr8:124554600-124555400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr8:124554600-124555800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr8:124554600-124556600	Weak transcription	Fetal Brain Male	brain
28	chr8:124554600-124558600	Weak transcription	Left Ventricle	heart
29	chr8:124554600-124558600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr8:124554600-124558600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:124554600-124558800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:124554600-124558800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr8:124554600-124558800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr8:124554600-124558800	Weak transcription	Fetal Intestine Small	intestine
35	chr8:124554600-124558800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:124554600-124558800	Weak transcription	A549	lung
37	chr8:124554600-124558800	Weak transcription	HMEC	breast
38	chr8:124554600-124558800	Weak transcription	HSMMtube	muscle
39	chr8:124554600-124558800	Weak transcription	NHDF-Ad	bronchial
40	chr8:124554600-124559000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr8:124554600-124559000	Weak transcription	NHEK	skin
42	chr8:124554600-124559200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr8:124554600-124559200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:124554600-124559200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr8:124554600-124559200	Weak transcription	Fetal Intestine Large	intestine
46	chr8:124554600-124559200	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr8:124554600-124560200	Weak transcription	Small Intestine	intestine
48	chr8:124554600-124560200	Weak transcription	NHLF	lung
49	chr8:124554600-124560800	Weak transcription	Esophagus	oesophagus
50	chr8:124554600-124562400	Weak transcription	Adipose Nuclei	Adipose

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