Variant report

Variant	rs28578477
Chromosome Location	chr15:93191761-93191762
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr15:93191338-93191780	HepG2	liver:	n/a	n/a
2	FOXA1	chr15:93191313-93191818	HepG2	liver:	n/a	n/a
3	FOXA2	chr15:93191405-93191798	A549	lung:	n/a	n/a
4	FOXA1	chr15:93191473-93191804	T-47D	breast:	n/a	n/a
5	GATA3	chr15:93191456-93192374	MCF-7	breast:	n/a	n/a
6	FOXA1	chr15:93191373-93191879	HepG2	liver:	n/a	n/a
7	FOXA2	chr15:93191295-93192008	HepG2	liver:	n/a	n/a
8	FOXA1	chr15:93191346-93191810	HepG2	liver:	n/a	n/a
9	NR2F2	chr15:93191352-93191856	HepG2	liver:	n/a	chr15:93191581-93191596
10	NR2F2	chr15:93191346-93192238	MCF-7	breast:	n/a	chr15:93191581-93191596

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93187253..93189925-chr15:93190048..93192032,2	K562	blood:
2	chr15:93191617..93195403-chr15:93257490..93261490,4	MCF-7	breast:
3	chr15:93191674..93195100-chr15:93197023..93199781,4	K562	blood:
4	chr1:149857354..149859026-chr15:93189018..93191776,2	MCF-7	breast:
5	chr15:93191674..93194202-chr15:93197134..93199781,2	K562	blood:

No data

Variant related genes	Relation type
FAM174B	TF binding region
ENSG00000184678	Chromatin interaction
ENSG00000185442	Chromatin interaction
ENSG00000184260	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs285763	1.00[AMR][1000 genomes]
rs285768	1.00[AMR][1000 genomes]
rs28595521	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28715520	1.00[AMR][1000 genomes]
rs28731440	1.00[AMR][1000 genomes]
rs426798	1.00[AMR][1000 genomes]
rs445311	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93182000-93197800	Weak transcription	Small Intestine	intestine
3	chr15:93182600-93197200	Weak transcription	Fetal Kidney	kidney
4	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:93186400-93194200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:93186800-93192800	Enhancers	HUVEC	blood vessel
7	chr15:93187200-93193000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:93187400-93192000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:93187400-93193200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr15:93187400-93194000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr15:93187400-93194000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr15:93187600-93195800	Weak transcription	Brain Angular Gyrus	brain
13	chr15:93187800-93195600	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:93188200-93192200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:93188200-93193000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr15:93188400-93192400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:93188400-93192400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:93189000-93193400	Weak transcription	Fetal Stomach	stomach
19	chr15:93189000-93194000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr15:93189000-93195600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:93189000-93197000	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:93189200-93195200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:93189200-93195400	Weak transcription	Right Ventricle	heart
24	chr15:93189400-93193600	Weak transcription	Fetal Lung	lung
25	chr15:93189400-93193600	Weak transcription	Placenta	Placenta
26	chr15:93189400-93194000	Weak transcription	Fetal Muscle Leg	muscle
27	chr15:93189400-93197000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr15:93189400-93197000	Weak transcription	Esophagus	oesophagus
29	chr15:93189800-93193000	Enhancers	Pancreatic Islets	Pancreatic Islet
30	chr15:93190400-93192000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr15:93190400-93192000	Enhancers	Right Atrium	heart
32	chr15:93190400-93192200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:93190400-93194200	Enhancers	Gastric	stomach
34	chr15:93190600-93191800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:93190600-93191800	Enhancers	Fetal Intestine Small	intestine
36	chr15:93190600-93197000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:93190800-93194000	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr15:93190800-93195400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr15:93191000-93192400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:93191000-93193600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr15:93191000-93194000	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr15:93191000-93194200	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr15:93191000-93196600	Weak transcription	HSMM	muscle
44	chr15:93191000-93197400	Weak transcription	HSMMtube	muscle
45	chr15:93191200-93192200	Enhancers	Stomach Smooth Muscle	stomach
46	chr15:93191400-93191800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr15:93191400-93191800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr15:93191400-93192000	Enhancers	Liver	Liver
49	chr15:93191400-93192000	Flanking Active TSS	Stomach Mucosa	stomach
50	chr15:93191400-93194200	Enhancers	Pancreas	Pancrea

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