Variant report

Variant	rs28578887
Chromosome Location	chr6:11637295-11637296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs28692581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58772592	1.00[AMR][1000 genomes]
rs73721782	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763532	chr6:11634722-11641048	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11633200-11640200	Weak transcription	Aorta	Aorta
2	chr6:11633600-11637400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:11633800-11637400	Weak transcription	HSMMtube	muscle
4	chr6:11634800-11637400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:11635600-11638000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:11636200-11639200	Enhancers	Pancreas	Pancrea
7	chr6:11636600-11638400	Enhancers	Stomach Mucosa	stomach
8	chr6:11637000-11638000	Enhancers	NH-A	brain
9	chr6:11637000-11638200	Enhancers	Osteobl	bone
10	chr6:11637000-11638600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:11637000-11639000	Weak transcription	Fetal Lung	lung
12	chr6:11637200-11637400	Enhancers	Fetal Stomach	stomach
13	chr6:11637200-11637800	Enhancers	Stomach Smooth Muscle	stomach
14	chr6:11637200-11638400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr6:11637200-11638800	Enhancers	HSMM	muscle
16	chr6:11637200-11640200	Weak transcription	Ovary	ovary
17	chr6:11637200-11640400	Weak transcription	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links