Variant report

Variant	rs28578995
Chromosome Location	chr8:8220604-8220605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:8215387..8217821-chr8:8218761..8221155,2	K562	blood:
2	chr8:8213178..8216112-chr8:8219372..8221900,2	K562	blood:
3	chr8:8219726..8222734-chr8:8227381..8229987,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11996133	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1914824	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1914825	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1914826	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7006376	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs724266	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915915	chr8:7239471-8222024	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases
2	nsv533299	chr8:7268825-8222024	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	75 gene(s)	inside rSNPs	diseases
3	nsv869874	chr8:7753583-8229906	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv817196	chr8:8079861-8255544	Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv465448	chr8:8098079-8403142	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv610152	chr8:8098079-8403142	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv610153	chr8:8098079-8454531	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv610154	chr8:8101641-8328101	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1032259	chr8:8108863-8247113	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	nsv1020290	chr8:8108863-8260280	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv539440	chr8:8108863-8260280	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv1025994	chr8:8108863-8580201	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv1029268	chr8:8130629-8403435	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
15	nsv539446	chr8:8130629-8403435	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
16	nsv1030433	chr8:8130629-8653691	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
17	nsv539447	chr8:8130629-8653691	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
18	nsv831227	chr8:8204838-8367160	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
19	nsv610157	chr8:8207339-8232143	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8210600-8224800	ZNF genes & repeats	GM12878-XiMat	blood
2	chr8:8211200-8222000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:8211600-8227400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:8211800-8221200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
5	chr8:8212000-8221000	ZNF genes & repeats	A549	lung
6	chr8:8212000-8221800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr8:8212000-8222600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr8:8212000-8222600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr8:8212000-8223000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr8:8212200-8222600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
11	chr8:8212400-8221200	ZNF genes & repeats	Primary B cells from cord blood	blood
12	chr8:8212800-8222200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr8:8212800-8222400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
14	chr8:8213200-8221800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr8:8213200-8222400	ZNF genes & repeats	NHEK	skin
16	chr8:8213400-8222800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
17	chr8:8213600-8221200	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
18	chr8:8214200-8221000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:8214600-8221000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr8:8215400-8221200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
21	chr8:8215400-8222400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
22	chr8:8215600-8221600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:8217000-8221600	ZNF genes & repeats	Fetal Intestine Large	intestine
24	chr8:8217800-8221200	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:8218400-8221000	ZNF genes & repeats	NHLF	lung
26	chr8:8218400-8221200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr8:8219000-8221000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:8219400-8222400	Genic enhancers	HepG2	liver
29	chr8:8219600-8221000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:8219600-8221000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:8219600-8221000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
32	chr8:8219600-8221000	ZNF genes & repeats	Fetal Lung	lung
33	chr8:8219800-8221200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
34	chr8:8219800-8221200	Strong transcription	Fetal Brain Male	brain
35	chr8:8220200-8225400	Weak transcription	Stomach Mucosa	stomach
36	chr8:8220200-8227800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr8:8220200-8228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:8220200-8230000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr8:8220200-8233000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:8220400-8220800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr8:8220400-8220800	Weak transcription	Fetal Kidney	kidney
42	chr8:8220400-8220800	Weak transcription	HSMMtube	muscle
43	chr8:8220400-8220800	Weak transcription	HUVEC	blood vessel
44	chr8:8220400-8221000	Weak transcription	Placenta	Placenta
45	chr8:8220400-8221600	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr8:8220400-8221600	Weak transcription	NH-A	brain
47	chr8:8220400-8222400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr8:8220400-8222400	Weak transcription	Gastric	stomach
49	chr8:8220400-8222400	Strong transcription	HSMM	muscle
50	chr8:8220400-8222600	Strong transcription	Duodenum Mucosa	Duodenum

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