Variant report

Variant	rs28579029
Chromosome Location	chr4:101017970-101017971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100869287..100871167-chr4:101016882..101019433,2	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28395423	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101014400-101018000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr4:101014600-101019800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:101015200-101019000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:101015200-101020600	Weak transcription	Fetal Intestine Large	intestine
6	chr4:101015200-101021600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:101015200-101022200	Weak transcription	Fetal Thymus	thymus
8	chr4:101015400-101020800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr4:101015400-101021800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:101015400-101022000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:101015600-101022200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr4:101016000-101018000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:101016600-101018000	Enhancers	HepG2	liver
14	chr4:101016800-101018000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr4:101017000-101018000	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:101017000-101018000	Enhancers	GM12878-XiMat	blood
17	chr4:101017000-101018200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:101017000-101018200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr4:101017200-101018200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:101017200-101018400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:101017200-101021800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr4:101017400-101022000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr4:101017400-101022400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:101017600-101018000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:101017600-101019200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:101017600-101019400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr4:101017600-101021400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr4:101017800-101018000	Enhancers	Placenta Amnion	Placenta Amnion
29	chr4:101017800-101019400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr4:101017800-101021400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr4:101017800-101021800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:101017800-101022000	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:101017800-101022000	Weak transcription	Dnd41	blood
34	chr4:101017800-101022200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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