Variant report

Variant	rs28579432
Chromosome Location	chr13:86560309-86560310
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17080184	1.00[AMR][1000 genomes]
rs17080285	1.00[AMR][1000 genomes]
rs7988447	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900734	chr13:86415632-86911159	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900737	chr13:86429834-86639464	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv900738	chr13:86449302-86628241	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv900739	chr13:86449302-86736910	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv900740	chr13:86449302-86911159	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900741	chr13:86461429-86959695	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv524758	chr13:86463135-86568584	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv900742	chr13:86463135-86618098	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv900743	chr13:86477773-86581867	ZNF genes & repeats Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv900746	chr13:86498444-86618098	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv562611	chr13:86521995-86570412	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv900749	chr13:86529275-86628241	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv900750	chr13:86529275-86740599	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv900751	chr13:86533687-86605288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1035427	chr13:86539848-86588087	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv456054	chr13:86542148-86575869	Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv562612	chr13:86542148-86575869	Enhancers Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv832669	chr13:86543824-86697234	Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv900752	chr13:86545903-86949574	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	nsv562613	chr13:86551371-86620040	Flanking Active TSS Enhancers Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
21	nsv900753	chr13:86551371-86639464	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv471163	chr13:86558900-86620039	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
23	nsv900754	chr13:86558900-86639464	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86559600-86560400	Enhancers	Hela-S3	cervix
2	chr13:86560000-86560600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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