Variant report

Variant	rs28579673
Chromosome Location	chr4:110767804-110767805
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10008969	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021699	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470994	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58849324	0.81[AFR][1000 genomes]
rs9990841	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110737600-110770600	Weak transcription	Aorta	Aorta
2	chr4:110744400-110774400	Weak transcription	Psoas Muscle	Psoas
3	chr4:110744600-110773200	Weak transcription	Primary T cells from cord blood	blood
4	chr4:110757800-110772800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:110763400-110771800	Weak transcription	Pancreas	Pancrea
6	chr4:110766800-110769600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:110767000-110768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:110767200-110768000	Enhancers	Fetal Intestine Large	intestine
9	chr4:110767200-110768200	Enhancers	Fetal Intestine Small	intestine
10	chr4:110767400-110768200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr4:110767600-110768200	Enhancers	Duodenum Mucosa	Duodenum
12	chr4:110767600-110768200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr4:110767600-110768400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:110767800-110768000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr4:110767800-110768000	Enhancers	HUVEC	blood vessel
16	chr4:110767800-110768200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr4:110767800-110769200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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