Variant report

Variant	rs28579707
Chromosome Location	chr8:102597062-102597063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:102375493..102378356-chr8:102595970..102598513,2	MCF-7	breast:
2	chr8:102584397..102586462-chr8:102595922..102598854,2	MCF-7	breast:
3	chr8:102511469..102513508-chr8:102595474..102597315,2	MCF-7	breast:
4	chr8:102595468..102600144-chr8:102610576..102613880,7	MCF-7	breast:
5	chr8:102595035..102599988-chr8:102610070..102614354,7	MCF-7	breast:
6	chr8:102593460..102597757-chr8:102598202..102602881,7	MCF-7	breast:
7	chr8:102588119..102597900-chr8:102614552..102624670,18	MCF-7	breast:
8	chr8:102525583..102527812-chr8:102595474..102597221,3	MCF-7	breast:
9	chr8:102594059..102599317-chr8:102614223..102621570,11	MCF-7	breast:

No data

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12546518	0.86[EUR][1000 genomes]
rs28521662	0.86[EUR][1000 genomes]
rs6991967	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891230	chr8:102569309-102604306	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102589200-102599400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:102589600-102599800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:102590400-102603400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:102590600-102598600	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:102590600-102631600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:102590600-102635200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr8:102592000-102611000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr8:102592200-102597800	Weak transcription	Fetal Heart	heart
10	chr8:102593000-102598800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr8:102593800-102598600	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:102594000-102599600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:102594000-102603000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:102594000-102611600	Weak transcription	Fetal Intestine Large	intestine
15	chr8:102594200-102599400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr8:102594200-102601000	Weak transcription	HMEC	breast
17	chr8:102594200-102603800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:102594200-102612000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:102594600-102603600	Weak transcription	Placenta	Placenta
20	chr8:102595200-102597400	Enhancers	Liver	Liver
21	chr8:102595200-102597400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr8:102595600-102597400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr8:102595800-102598800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr8:102595800-102600200	Weak transcription	NHEK	skin
25	chr8:102595800-102605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr8:102596000-102615000	Weak transcription	Stomach Mucosa	stomach
27	chr8:102596400-102597200	Enhancers	A549	lung
28	chr8:102596400-102601400	Weak transcription	Fetal Kidney	kidney
29	chr8:102596800-102597400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:102596800-102597400	Enhancers	Fetal Lung	lung
31	chr8:102596800-102597400	Enhancers	Left Ventricle	heart
32	chr8:102596800-102597600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:102596800-102597800	Genic enhancers	Pancreas	Pancrea
34	chr8:102596800-102599200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr8:102597000-102597200	Weak transcription	Fetal Brain Female	brain
36	chr8:102597000-102597200	Enhancers	Gastric	stomach
37	chr8:102597000-102597200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
38	chr8:102597000-102597400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr8:102597000-102597400	Enhancers	Colonic Mucosa	Colon
40	chr8:102597000-102597400	Genic enhancers	Esophagus	oesophagus
41	chr8:102597000-102597400	Enhancers	Fetal Muscle Trunk	muscle
42	chr8:102597000-102597400	ZNF genes & repeats	Lung	lung
43	chr8:102597000-102597400	Enhancers	Right Atrium	heart
44	chr8:102597000-102597600	Enhancers	Fetal Brain Male	brain
45	chr8:102597000-102597800	Enhancers	Ovary	ovary
46	chr8:102597000-102598400	Strong transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links