Variant report

Variant	rs28579794
Chromosome Location	chr14:84178727-84178728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28392859	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57232838	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367424	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367428	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73367431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73368524	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046869	chr14:83749048-84284813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv542152	chr14:83749048-84284813	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1039276	chr14:83814378-84232588	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758365	chr14:84136458-84293840	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2760003	chr14:84136458-84293840	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv832844	chr14:84136460-84293827	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84173400-84178800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:84173400-84180000	Weak transcription	Ovary	ovary
3	chr14:84178000-84178800	Weak transcription	Fetal Brain Male	brain
4	chr14:84178400-84179600	Weak transcription	Fetal Brain Female	brain
5	chr14:84178600-84178800	Enhancers	Fetal Heart	heart
6	chr14:84178600-84179200	Enhancers	Fetal Lung	lung
7	chr14:84178600-84179200	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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