Variant report

Variant	rs2857988
Chromosome Location	chr4:3485412-3485413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr4:3484964-3488054	ECC-1	luminal epithelium:	n/a	chr4:3485633-3485641
2	FOXM1	chr4:3484986-3487210	ECC-1	luminal epithelium:	n/a	n/a
3	POLR2A	chr4:3485375-3485555	ProgFib	skin:	n/a	n/a
4	EP300	chr4:3485064-3487144	ECC-1	luminal epithelium:	n/a	chr4:3485583-3485599
5	ZBTB7A	chr4:3485033-3487141	ECC-1	luminal epithelium:	n/a	chr4:3485633-3485641
6	EP300	chr4:3484927-3487690	ECC-1	luminal epithelium:	n/a	chr4:3485583-3485599
7	NR3C1	chr4:3485206-3485589	ECC-1	luminal epithelium:	n/a	n/a
8	TEAD4	chr4:3485024-3485678	ECC-1	luminal epithelium:	n/a	chr4:3485343-3485352
9	TCF12	chr4:3484972-3487780	ECC-1	luminal epithelium:	n/a	chr4:3487770-3487780 chr4:3485420-3485427 chr4:3486044-3486052 chr4:3486087-3486097
10	MAX	chr4:3484979-3487596	ECC-1	luminal epithelium:	n/a	chr4:3485249-3485258 chr4:3485250-3485257 chr4:3485248-3485259 chr4:3486892-3486902 chr4:3486927-3486937 chr4:3486012-3486021
11	ESR1	chr4:3485102-3485600	ECC-1	luminal epithelium:	n/a	n/a
12	ESR1	chr4:3485056-3485605	ECC-1	luminal epithelium:	n/a	n/a
13	POLR2A	chr4:3485074-3487389	MCF-7	breast:	n/a	n/a
14	POLR2A	chr4:3484972-3485733	ECC-1	luminal epithelium:	n/a	n/a
15	TCF12	chr4:3484886-3487803	ECC-1	luminal epithelium:	n/a	chr4:3487770-3487780 chr4:3485420-3485427 chr4:3486044-3486052 chr4:3486087-3486097
16	MAX	chr4:3484913-3487647	ECC-1	luminal epithelium:	n/a	chr4:3485249-3485258 chr4:3485250-3485257 chr4:3485248-3485259 chr4:3486892-3486902 chr4:3486927-3486937 chr4:3486012-3486021
17	NFIC	chr4:3484979-3487718	ECC-1	luminal epithelium:	n/a	chr4:3485981-3485998
18	NFIC	chr4:3484994-3487716	ECC-1	luminal epithelium:	n/a	chr4:3485981-3485998
19	POLR2A	chr4:3485050-3487936	MCF-7	breast:	n/a	n/a
20	USF1	chr4:3485054-3485679	ECC-1	luminal epithelium:	n/a	chr4:3485588-3485604
21	POLR2A	chr4:3484985-3487966	ECC-1	luminal epithelium:	n/a	n/a
22	MAX	chr4:3485060-3487617	MCF-7	breast:	n/a	chr4:3485249-3485258 chr4:3485250-3485257 chr4:3485248-3485259 chr4:3486892-3486902 chr4:3486927-3486937 chr4:3486012-3486021
23	ESR1	chr4:3485092-3485584	ECC-1	luminal epithelium:	n/a	n/a
24	TEAD4	chr4:3484968-3487036	ECC-1	luminal epithelium:	n/a	chr4:3485343-3485352
25	NR3C1	chr4:3485036-3485645	ECC-1	luminal epithelium:	n/a	chr4:3485054-3485067

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:3485393-3485443	Hepatocyte	liver:	n/a
2	chr4:3485393-3485443	HCF	heart:	n/a
3	chr4:3485393-3485443	H1-hESC	embryonic stem cell:	embryo
4	chr4:3485393-3485443	SK-N-SH	brain:	n/a
5	chr4:3485393-3485443	HepG2	liver:	n/a
6	chr4:3485393-3485443	AoSMC	blood vessel:	n/a
7	chr4:3485393-3485443	AG04449	skin:	fetal
8	chr4:3485393-3485443	SK-N-SH_RA	brain:	n/a
9	chr4:3485393-3485443	ECC-1	luminal epithelium:	n/a
10	chr4:3485393-3485443	HNPCEpiC	eye:	n/a
11	chr4:3485393-3485443	ProgFib	skin:	n/a
12	chr4:3485393-3485443	HCPEpiC	choroid plexus:	n/a
13	chr4:3485393-3485443	SAEC	small airway:	n/a
14	chr4:3485393-3485443	NB4	blood:	n/a
15	chr4:3485393-3485443	RPTEC	kidney:	n/a
16	chr4:3485393-3485443	MCF10A-Er-Src	breast:	n/a
17	chr4:3485393-3485443	K562	blood:	n/a
18	chr4:3485393-3485443	AG09309	skin:	n/a
19	chr4:3485393-3485443	PANC-1	pancreas:	n/a
20	chr4:3485393-3485443	HEEpiC	esophagus:	n/a
21	chr4:3485393-3485443	A549	lung:	n/a
22	chr4:3485393-3485443	Caco-2	colon:	n/a
23	chr4:3485393-3485443	NT2-D1	testis:	n/a
24	chr4:3485393-3485443	HMEC	breast:	n/a
25	chr4:3485393-3485443	Jurkat	blood:	n/a
26	chr4:3485393-3485443	HL-60	blood:	n/a
27	chr4:3485393-3485443	AG10803	skin:	n/a
28	chr4:3485393-3485443	LNCaP	prostate:	n/a
29	chr4:3485393-3485443	HCM	heart:	n/a
30	chr4:3485393-3485443	HPAEpiC	pulmonary alveolar:	n/a
31	chr4:3485393-3485443	AG04450	lung:	fetal
32	chr4:3485393-3485443	HRE	kidney:	n/a
33	chr4:3485393-3485443	BJ	skin:	n/a
34	chr4:3485393-3485443	HAEpiC	amniotic membrane:	n/a
35	chr4:3485393-3485443	NH-A	brain:	n/a
36	chr4:3485393-3485443	HEK293	kidney:	embryo
37	chr4:3485393-3485443	ovcar-3	ovarian:	n/a
38	chr4:3485393-3485443	HRPEpiC	eye:	n/a
39	chr4:3485393-3485443	IMR90	lung:	fetal
40	chr4:3485393-3485443	GM06990	blood:	n/a
41	chr4:3485393-3485443	GM12892	blood:	n/a
42	chr4:3485393-3485443	T-47D	breast:	n/a
43	chr4:3485393-3485443	GM19239	blood:	n/a
44	chr4:3485393-3485443	PFSK-1	brain:	n/a
45	chr4:3485393-3485443	NHDF-neo	bronchial:	n/a
46	chr4:3485393-3485443	GM12891	blood:	n/a
47	chr4:3485393-3485443	SK-N-MC	brain:	n/a
48	chr4:3485393-3485443	BE2_C	brain:	n/a
49	chr4:3485393-3485443	NHBE	bronchial:	n/a
50	chr4:3485393-3485443	HIPEpiC	eye:	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:3418569..3420412-chr4:3484561..3487471,2	MCF-7	breast:
2	chr4:3484714..3487220-chr4:3532599..3535251,4	MCF-7	breast:
3	chr4:3439130..3442230-chr4:3483136..3486025,3	MCF-7	breast:
4	chr4:3292637..3295776-chr4:3483843..3488274,4	MCF-7	breast:
5	chr4:3484197..3487656-chr4:3491883..3496058,4	K562	blood:
6	chr4:3483725..3485778-chr4:3827881..3829780,2	MCF-7	breast:
7	chr4:3386285..3389665-chr4:3485168..3487566,3	MCF-7	breast:

Variant related genes	Relation type
DOK7	TF binding region
DOK7	CpG island
ENSG00000159788	Chromatin interaction
ENSG00000163956	Chromatin interaction
ENSG00000175920	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1881801	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1881803	0.90[ASN][1000 genomes]
rs1881804	0.86[ASN][1000 genomes]
rs1881805	0.86[ASN][1000 genomes]
rs2006277	0.86[ASN][1000 genomes]
rs2006791	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2857984	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs731450	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs736993	0.90[ASN][1000 genomes]
rs7676662	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs916189	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:55 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428106	chr4:3226182-3752322	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv878462	chr4:3311548-3505448	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007847	chr4:3317904-3527357	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv537001	chr4:3317904-3527357	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv878463	chr4:3363994-3498896	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv428435	chr4:3386773-3623321	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
7	nsv933265	chr4:3392824-4283640	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
8	esv2757918	chr4:3394344-4350986	Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	esv2759219	chr4:3394344-4350986	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv878464	chr4:3405165-3505448	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv878465	chr4:3405165-3566567	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv1791851	chr4:3407753-3534022	Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	nsv1000383	chr4:3412585-3839781	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
14	nsv878469	chr4:3413209-3566567	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
15	nsv878470	chr4:3413209-3566567	Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv878471	chr4:3413209-3884998	Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
17	esv1816543	chr4:3414654-3942867	Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
18	nsv1001328	chr4:3421979-3654381	Bivalent/Poised TSS Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
19	nsv878474	chr4:3422211-3504562	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv1008575	chr4:3429062-3487322	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv967719	chr4:3429579-3535969	Genic enhancers Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
22	nsv470004	chr4:3429856-3584373	Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv878475	chr4:3431342-3504562	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv516505	chr4:3434336-3504562	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv1011554	chr4:3436478-3975772	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
26	nsv537002	chr4:3436478-3975772	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
27	nsv878476	chr4:3436588-3504562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv878477	chr4:3438643-3584059	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
29	nsv829840	chr4:3444216-3623031	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
30	nsv878478	chr4:3447243-3566567	Bivalent Enhancer Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
31	nsv1002774	chr4:3450810-3577017	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
32	nsv1012371	chr4:3450810-3878976	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
33	nsv537003	chr4:3450810-3878976	Active TSS Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
34	nsv998670	chr4:3453787-3909535	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
35	nsv878479	chr4:3461900-3498896	Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
36	nsv878480	chr4:3461900-3504562	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
37	nsv878481	chr4:3461900-3566567	Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
38	nsv878482	chr4:3461900-3573260	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
39	nsv878483	chr4:3461900-3683269	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
40	nsv1008394	chr4:3462618-3577017	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
41	esv1806490	chr4:3463724-3501161	Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
42	esv1808609	chr4:3463924-3500961	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
43	nsv433362	chr4:3467519-3485786	Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
44	nsv461170	chr4:3471754-3496940	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
45	nsv593458	chr4:3471754-3496940	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
46	esv2757031	chr4:3472162-3510598	Bivalent Enhancer Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
47	nsv998512	chr4:3472878-3643547	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
48	nsv537004	chr4:3472878-3643547	Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
49	nsv878484	chr4:3473139-3499153	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
50	nsv878485	chr4:3473139-3525057	Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:3467000-3493600	Weak transcription	Aorta	Aorta
2	chr4:3468800-3486400	Weak transcription	Psoas Muscle	Psoas
3	chr4:3476800-3490800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr4:3481000-3489200	Enhancers	Fetal Heart	heart
5	chr4:3481200-3485600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:3481200-3488800	Enhancers	Left Ventricle	heart
7	chr4:3481400-3486200	Enhancers	Right Ventricle	heart
8	chr4:3481400-3491200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:3482200-3485600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:3482200-3486600	Enhancers	Stomach Mucosa	stomach
11	chr4:3482400-3486400	Enhancers	Primary B cells from cord blood	blood
12	chr4:3482400-3487200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr4:3483000-3486800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:3483200-3489600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:3484000-3485600	Weak transcription	Right Atrium	heart
16	chr4:3484000-3486600	Enhancers	Gastric	stomach
17	chr4:3484200-3485600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:3484200-3485600	Enhancers	HSMM	muscle
19	chr4:3484200-3486400	Weak transcription	Lung	lung
20	chr4:3484400-3485600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr4:3484600-3486000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr4:3485000-3486000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:3485000-3486600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
24	chr4:3485000-3486800	Enhancers	Brain Angular Gyrus	brain
25	chr4:3485000-3489400	Bivalent Enhancer	Placenta	Placenta
26	chr4:3485200-3485600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:3485200-3485600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:3485200-3485600	Bivalent Enhancer	Brain Substantia Nigra	brain
29	chr4:3485200-3485600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
30	chr4:3485200-3485800	Enhancers	Esophagus	oesophagus
31	chr4:3485200-3486200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
32	chr4:3485200-3486400	Enhancers	A549	lung
33	chr4:3485200-3486600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr4:3485200-3486600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr4:3485200-3486800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr4:3485200-3486800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
37	chr4:3485200-3486800	Bivalent Enhancer	Fetal Stomach	stomach
38	chr4:3485200-3487400	Enhancers	Pancreas	Pancrea
39	chr4:3485200-3487400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
40	chr4:3485200-3487400	Enhancers	Spleen	Spleen
41	chr4:3485200-3488200	Flanking Active TSS	HMEC	breast
42	chr4:3485200-3489400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
43	chr4:3485200-3489600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:3485400-3485600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:3485400-3485600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr4:3485400-3485600	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
47	chr4:3485400-3485600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
48	chr4:3485400-3485600	Enhancers	HSMMtube	muscle
49	chr4:3485400-3485800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:3485400-3485800	Enhancers	NHDF-Ad	bronchial

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