Variant report

Variant	rs28581805
Chromosome Location	chr21:45204392-45204393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:45202942..45205405-chr21:45231641..45234246,2	K562	blood:
2	chr21:45137987..45140487-chr21:45203011..45205092,2	MCF-7	breast:
3	chr21:45137818..45140003-chr21:45203193..45206187,2	MCF-7	breast:
4	chr21:45201612..45205256-chr21:45206995..45210818,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000160209	Chromatin interaction
ENSG00000215458	Chromatin interaction
ENSG00000160214	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs17004508	1.00[ASN][1000 genomes]
rs2838392	1.00[ASN][1000 genomes]
rs28490099	1.00[EUR][1000 genomes]
rs28648008	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57815996	1.00[EUR][1000 genomes]
rs58194014	1.00[ASN][1000 genomes]
rs58549917	1.00[ASN][1000 genomes]
rs59339575	1.00[EUR][1000 genomes]
rs61299327	1.00[EUR][1000 genomes]
rs6383	1.00[EUR][1000 genomes]
rs73908377	1.00[EUR][1000 genomes]
rs73908383	1.00[EUR][1000 genomes]
rs743467	1.00[ASN][1000 genomes]
rs8127335	1.00[EUR][1000 genomes]
rs8128568	1.00[ASN][1000 genomes]
rs8129408	1.00[EUR][1000 genomes]
rs8129421	1.00[EUR][1000 genomes]
rs8132097	1.00[EUR][1000 genomes]
rs8132862	1.00[EUR][1000 genomes]
rs9974076	1.00[EUR][1000 genomes]
rs9978334	1.00[EUR][1000 genomes]
rs9979923	1.00[EUR][1000 genomes]
rs9984929	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531545	chr21:45095397-45395904	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv913876	chr21:45119629-45267193	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2830066	chr21:45133868-45258047	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv913879	chr21:45145286-45237039	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv913880	chr21:45145286-45263920	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv913881	chr21:45145286-45267193	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv470904	chr21:45151045-45258047	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv913882	chr21:45151874-45370715	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv834107	chr21:45155325-45294546	Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
10	esv33817	chr21:45169412-46031810	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
11	nsv520305	chr21:45175958-45246326	Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv834108	chr21:45178037-45369641	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
13	nsv913883	chr21:45191139-45252838	Weak transcription Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
14	nsv913884	chr21:45191139-45255836	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv544469	chr21:45194085-45257959	Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:45196800-45206400	Weak transcription	Gastric	stomach
2	chr21:45196800-45206400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr21:45196800-45208800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr21:45196800-45209000	Weak transcription	Aorta	Aorta
5	chr21:45198800-45206400	Weak transcription	Spleen	Spleen
6	chr21:45198800-45206600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr21:45199000-45206400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr21:45199000-45208600	Weak transcription	Stomach Mucosa	stomach
9	chr21:45199000-45208800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr21:45199200-45208400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr21:45199200-45208600	Weak transcription	Primary T cells from cord blood	blood
12	chr21:45199400-45208600	Weak transcription	Primary B cells from cord blood	blood
13	chr21:45200000-45206400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr21:45200600-45204600	Enhancers	NHEK	skin
15	chr21:45200800-45204800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr21:45201000-45206600	Weak transcription	Colonic Mucosa	Colon
17	chr21:45202600-45208600	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr21:45203000-45204600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr21:45203200-45208400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr21:45203200-45208800	Weak transcription	HMEC	breast
21	chr21:45203400-45206400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr21:45203400-45208400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr21:45203400-45208400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr21:45203400-45208400	Weak transcription	GM12878-XiMat	blood
25	chr21:45203600-45206600	Weak transcription	Lung	lung
26	chr21:45203600-45208400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr21:45203600-45208400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr21:45203600-45208600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr21:45203600-45208600	Weak transcription	A549	lung
30	chr21:45203800-45204600	Enhancers	HepG2	liver
31	chr21:45203800-45206200	Weak transcription	Pancreas	Pancrea
32	chr21:45203800-45206400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr21:45203800-45206400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr21:45203800-45206400	Weak transcription	Hela-S3	cervix
35	chr21:45203800-45208600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr21:45203800-45208600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr21:45203800-45208600	Weak transcription	Adipose Nuclei	Adipose
38	chr21:45203800-45208600	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr21:45204000-45204400	Weak transcription	Esophagus	oesophagus
40	chr21:45204200-45204800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr21:45204200-45204800	Enhancers	K562	blood

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