Variant report

Variant	rs28582074
Chromosome Location	chr3:112955117-112955118
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:112950520..112952808-chr3:112954208..112956518,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv877348	chr3:112914756-113012509	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv3329447	chr3:112954312-112956510	Weak transcription Genic enhancers Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112932000-112972800	Weak transcription	Aorta	Aorta
2	chr3:112943600-112960600	Weak transcription	Fetal Thymus	thymus
3	chr3:112947000-112955600	Weak transcription	Fetal Intestine Small	intestine
4	chr3:112951000-112958800	Weak transcription	Fetal Kidney	kidney
5	chr3:112951200-112958800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:112951200-112959000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr3:112951200-112967000	Weak transcription	Colonic Mucosa	Colon
8	chr3:112951600-112960200	Weak transcription	NHLF	lung
9	chr3:112952400-112959000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:112953000-112959800	Weak transcription	Fetal Brain Female	brain
11	chr3:112953800-112955600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:112953800-112956200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:112953800-112958400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:112953800-112958400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:112953800-112959000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr3:112953800-112959600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:112953800-112959600	Weak transcription	Esophagus	oesophagus
18	chr3:112953800-112959600	Weak transcription	Fetal Brain Male	brain
19	chr3:112953800-112960600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:112953800-112965600	Weak transcription	Right Atrium	heart
21	chr3:112954000-112956000	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:112954000-112956200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:112954000-112957600	Weak transcription	Ovary	ovary
24	chr3:112954000-112958200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr3:112954000-112958400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:112954000-112958400	Weak transcription	NHDF-Ad	bronchial
27	chr3:112954000-112959000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:112954000-112959600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:112954200-112958200	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:112954200-112958800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr3:112954200-112958800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr3:112954200-112959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:112954200-112959000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr3:112954200-112959600	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:112954200-112959600	Weak transcription	Osteobl	bone
36	chr3:112954200-112960400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr3:112954200-112965600	Weak transcription	Brain Substantia Nigra	brain
38	chr3:112954400-112955400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:112954400-112956000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:112954400-112956800	Weak transcription	Colon Smooth Muscle	Colon
41	chr3:112954400-112958400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr3:112954400-112958800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr3:112954400-112959000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:112954400-112959600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:112954400-112959600	Weak transcription	Fetal Lung	lung
46	chr3:112954400-112960200	Weak transcription	HSMM	muscle
47	chr3:112954600-112956000	Weak transcription	Fetal Stomach	stomach
48	chr3:112954600-112957800	Weak transcription	Rectal Smooth Muscle	rectum
49	chr3:112954600-112958800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:112954600-112959000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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