Variant report

Variant	rs28582757
Chromosome Location	chr7:16819428-16819429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16813395..16815835-chr7:16818314..16820791,2	K562	blood:
2	chr7:16816860..16820045-chr7:16832794..16835975,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106537	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10240631	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10258691	0.84[AFR][1000 genomes]
rs11973387	1.00[EUR][1000 genomes]
rs55792810	1.00[EUR][1000 genomes]
rs55984905	1.00[EUR][1000 genomes]
rs60235307	0.85[AMR][1000 genomes]
rs6968516	1.00[EUR][1000 genomes]
rs73299630	0.85[AMR][1000 genomes]
rs73299645	0.85[AMR][1000 genomes]
rs73299648	0.85[AMR][1000 genomes]
rs73301535	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7780556	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16795000-16828400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:16800600-16825600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr7:16803800-16825600	Weak transcription	Fetal Intestine Small	intestine
4	chr7:16805000-16832400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:16806400-16821400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:16810800-16823200	Weak transcription	Psoas Muscle	Psoas
7	chr7:16810800-16825000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:16811400-16821800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:16811400-16833600	Weak transcription	Fetal Muscle Leg	muscle
10	chr7:16811600-16820800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:16811600-16825000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:16811800-16824800	Weak transcription	Adipose Nuclei	Adipose
13	chr7:16812400-16821600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr7:16812800-16821000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:16813800-16825000	Weak transcription	Stomach Mucosa	stomach
16	chr7:16814000-16834600	Weak transcription	Fetal Brain Male	brain
17	chr7:16814200-16821200	Weak transcription	Left Ventricle	heart
18	chr7:16814200-16824800	Weak transcription	Osteobl	bone
19	chr7:16814200-16825400	Weak transcription	Gastric	stomach
20	chr7:16814200-16826400	Weak transcription	Right Ventricle	heart
21	chr7:16814400-16843800	Weak transcription	Small Intestine	intestine
22	chr7:16815000-16838000	Weak transcription	K562	blood
23	chr7:16815400-16823000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:16816000-16819800	Weak transcription	Lung	lung
25	chr7:16816000-16825000	Weak transcription	Fetal Brain Female	brain
26	chr7:16816800-16835000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr7:16817200-16821000	Weak transcription	NH-A	brain
28	chr7:16817800-16823400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr7:16818200-16820200	Enhancers	Primary B cells from cord blood	blood
30	chr7:16818600-16829000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr7:16818800-16820000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:16818800-16821400	Weak transcription	Fetal Intestine Large	intestine
33	chr7:16818800-16823400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:16818800-16825000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:16819000-16820000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:16819000-16822400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:16819000-16823000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:16819000-16830600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:16819200-16819600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links