Variant report

Variant	rs28584470
Chromosome Location	chr7:107880913-107880914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr7:107877067-107881295	SK-N-SH	brain:	n/a	chr7:107880541-107880550 chr7:107880543-107880557 chr7:107880658-107880672

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107880559..107882949-chr7:107899019..107901919,2	MCF-7	breast:

Variant related genes	Relation type
NRCAM	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10215090	1.00[AMR][1000 genomes]
rs10215098	1.00[AMR][1000 genomes]
rs10216147	1.00[AMR][1000 genomes]
rs10225239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10227650	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234410	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235073	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10247441	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10251655	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10255286	1.00[AMR][1000 genomes]
rs10256475	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10262726	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10263709	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10266877	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10271382	1.00[AMR][1000 genomes]
rs10274645	0.84[AFR][1000 genomes]
rs10275960	1.00[AMR][1000 genomes]
rs10279100	1.00[AMR][1000 genomes]
rs10279790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28373916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28418445	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28565878	1.00[AMR][1000 genomes]
rs28573201	1.00[AFR][1000 genomes]
rs28578635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28641825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41338849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55945586	1.00[AMR][1000 genomes]
rs56325000	1.00[AMR][1000 genomes]
rs58732508	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59796283	1.00[AMR][1000 genomes]
rs60225475	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9987047	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107830400-107886400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr7:107860600-107886600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:107871200-107886400	Weak transcription	Brain Anterior Caudate	brain
4	chr7:107874800-107886200	Weak transcription	HSMMtube	muscle
5	chr7:107875200-107881200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr7:107875800-107881600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr7:107876000-107881000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:107876000-107881200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:107876200-107881200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:107876200-107881200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr7:107876200-107881200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:107876400-107886400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:107877000-107885600	Weak transcription	HSMM	muscle
14	chr7:107877000-107886200	Weak transcription	HMEC	breast
15	chr7:107877800-107884600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:107877800-107884600	Weak transcription	Fetal Intestine Small	intestine
17	chr7:107877800-107886400	Weak transcription	Pancreas	Pancrea
18	chr7:107878400-107881200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:107878400-107885200	Weak transcription	Fetal Intestine Large	intestine
20	chr7:107879800-107881200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr7:107880000-107881200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:107880400-107882800	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:107880400-107884400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:107880400-107886200	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr7:107880600-107884600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:107880600-107884600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:107880600-107885200	Weak transcription	K562	blood
28	chr7:107880600-107887000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:107880800-107881000	Enhancers	A549	lung
30	chr7:107880800-107883600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:107880800-107886600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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