Variant report

Variant	rs28585036
Chromosome Location	chr15:43403955-43403956
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43397022..43400041-chr15:43403163..43407004,5	K562	blood:
2	chr15:43402075..43404958-chr15:43407508..43410226,3	K562	blood:

Variant related genes	Relation type
ENSG00000205871	Chromatin interaction
ENSG00000159459	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11070386	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs11070391	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11070396	0.86[CEU][hapmap]
rs11630595	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs11855754	0.86[CEU][hapmap]
rs12592725	0.83[ASW][hapmap];0.86[CEU][hapmap]
rs12899266	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs1462856	1.00[CEU][hapmap];0.93[GIH][hapmap]
rs16957511	0.86[CEU][hapmap]
rs2037392	0.86[CEU][hapmap]
rs2241516	0.86[CEU][hapmap]
rs2412752	0.93[JPT][hapmap]
rs2899077	0.86[CEU][hapmap]
rs2947019	0.92[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.91[LWK][hapmap];0.90[MKK][hapmap]
rs3736054	0.93[JPT][hapmap]
rs3803341	1.00[CEU][hapmap]
rs4573908	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs4923955	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs4924704	1.00[CEU][hapmap];0.86[GIH][hapmap];0.93[JPT][hapmap]
rs494863	0.86[CEU][hapmap]
rs495286	0.91[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[MKK][hapmap]
rs497138	0.85[CEU][hapmap]
rs530305	0.92[ASW][hapmap];0.86[CEU][hapmap];0.91[LWK][hapmap]
rs531850	0.86[CEU][hapmap]
rs538218	0.86[CEU][hapmap]
rs540587	1.00[CEU][hapmap]
rs6493076	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs6493077	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs7174028	1.00[CEU][hapmap];0.86[GIH][hapmap]
rs7174915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[JPT][hapmap]
rs7178567	1.00[CEU][hapmap];0.86[GIH][hapmap]
rs7183814	0.86[CEU][hapmap]
rs8027371	1.00[ASW][hapmap];0.86[CEU][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap]
rs8027733	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs8031767	1.00[CEU][hapmap];0.86[GIH][hapmap]
rs8037022	1.00[CEU][hapmap]
rs8042481	1.00[CEU][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv904138	chr15:43268970-43414673	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
10	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
11	nsv904142	chr15:43276345-43403955	Strong transcription Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv904143	chr15:43276345-43414673	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv904144	chr15:43276345-43482127	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
14	nsv904146	chr15:43294218-43414673	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
15	nsv904147	chr15:43309429-43403955	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	esv1802035	chr15:43370916-43487742	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43402400-43415000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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