Variant report

Variant	rs28586967
Chromosome Location	chr4:20590936-20590937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10005470	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018883	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021884	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10025917	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10030354	1.00[EUR][1000 genomes]
rs10030439	1.00[EUR][1000 genomes]
rs10470802	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13328045	1.00[EUR][1000 genomes]
rs28464575	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28730458	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28736462	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57414690	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60050424	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829875	chr4:20502895-20680956	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:20492000-20599800	Weak transcription	Aorta	Aorta
2	chr4:20535800-20593600	Weak transcription	Fetal Kidney	kidney
3	chr4:20536800-20618600	Weak transcription	Spleen	Spleen
4	chr4:20555600-20599200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:20556000-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:20567000-20604000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:20567200-20605200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:20567200-20617000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:20571200-20593800	Weak transcription	Osteobl	bone
10	chr4:20574800-20592200	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:20577400-20597200	Weak transcription	Fetal Stomach	stomach
12	chr4:20578000-20617400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:20578200-20616800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:20578400-20610000	Weak transcription	Fetal Brain Male	brain
15	chr4:20578600-20594200	Weak transcription	NHLF	lung
16	chr4:20579000-20593600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:20579400-20605600	Weak transcription	Adipose Nuclei	Adipose
18	chr4:20584200-20600200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:20584400-20591200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:20585800-20591200	Weak transcription	NHEK	skin
21	chr4:20586200-20591000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:20586400-20591000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:20586400-20591000	Weak transcription	Fetal Lung	lung
24	chr4:20586400-20591800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr4:20588400-20593600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:20589200-20592800	Strong transcription	NHDF-Ad	bronchial
27	chr4:20589200-20610600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:20589200-20620800	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:20590000-20620400	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:20590600-20591200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr4:20590600-20591400	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr4:20590600-20592400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:20590800-20591400	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr4:20590800-20591400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr4:20590800-20618400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links