Variant report

Variant	rs28591255
Chromosome Location	chr6:11682599-11682600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs6917332	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6920857	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6921618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7773628	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9461990	0.89[AMR][1000 genomes]
rs9462005	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9469796	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11681600-11685000	Weak transcription	NHEK	skin
2	chr6:11681600-11687600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:11681800-11685000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:11682000-11683200	Enhancers	HSMM	muscle
5	chr6:11682200-11682800	Enhancers	HSMMtube	muscle
6	chr6:11682400-11683000	Enhancers	Osteobl	bone
7	chr6:11682400-11683400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:11682400-11683600	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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