Variant report

Variant	rs28591571
Chromosome Location	chr14:84503790-84503791
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10130261	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134373	1.00[AMR][1000 genomes]
rs10146645	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10150992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17119436	1.00[AMR][1000 genomes]
rs17119532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28473523	1.00[AMR][1000 genomes]
rs8004922	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1382	chr14:84487547-84532237	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84502200-84504400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:84502400-84504200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:84502600-84504200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:84502800-84503800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:84502800-84504200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr14:84503000-84504200	Enhancers	Hela-S3	cervix
7	chr14:84503200-84503800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:84503200-84503800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:84503200-84503800	Enhancers	NHEK	skin
10	chr14:84503200-84504000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:84503400-84503800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr14:84503400-84503800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:84503400-84503800	Enhancers	HMEC	breast
14	chr14:84503600-84503800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:84503600-84504200	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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