Variant report

Variant	rs28594191
Chromosome Location	chr3:134910683-134910684
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134904377..134907908-chr3:134908448..134912165,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1027608	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1501195	0.83[AMR][1000 genomes]
rs35779003	0.85[AMR][1000 genomes]
rs3772636	0.90[ASN][1000 genomes]
rs3821502	0.91[ASN][1000 genomes]
rs4441681	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4569682	0.80[AMR][1000 genomes]
rs4894257	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4894258	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4894286	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4894287	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4894289	0.90[ASN][1000 genomes]
rs4894290	0.91[ASN][1000 genomes]
rs6439561	0.89[ASN][1000 genomes]
rs6763009	0.90[ASN][1000 genomes]
rs6766459	0.89[ASN][1000 genomes]
rs6776570	0.91[ASN][1000 genomes]
rs6799448	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6799471	0.80[AMR][1000 genomes]
rs875368	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs875369	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs882060	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9822213	0.80[AMR][1000 genomes]
rs9824249	0.88[ASN][1000 genomes]
rs9837009	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000277	chr3:134546080-134970837	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv877516	chr3:134689420-134918522	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134885600-134911800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:134885600-134912200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:134887600-134911400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:134889000-134924600	Weak transcription	Brain Anterior Caudate	brain
5	chr3:134895800-134912000	Weak transcription	Brain Angular Gyrus	brain
6	chr3:134901800-134911400	Weak transcription	Fetal Brain Female	brain
7	chr3:134907200-134913400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:134907400-134922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:134909000-134932400	Weak transcription	Psoas Muscle	Psoas
10	chr3:134909600-134910800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:134909600-134911000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr3:134909600-134911000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:134909600-134911200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr3:134909600-134911200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:134909800-134910800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:134909800-134911000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr3:134909800-134911000	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr3:134909800-134911000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:134909800-134911200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:134909800-134912200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:134910000-134913600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr3:134910000-134914800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:134910000-134926400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr3:134910200-134910800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr3:134910200-134910800	Enhancers	Fetal Stomach	stomach
26	chr3:134910200-134923400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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