Variant report

Variant	rs28595117
Chromosome Location	chr11:3684829-3684830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11028845	1.00[ASN][1000 genomes]
rs11028846	1.00[ASN][1000 genomes]
rs11028849	1.00[ASN][1000 genomes]
rs11028850	1.00[ASN][1000 genomes]
rs11028916	0.91[ASN][1000 genomes]
rs11029027	0.91[ASN][1000 genomes]
rs11029035	0.91[ASN][1000 genomes]
rs11029116	0.86[ASN][1000 genomes]
rs11029123	0.86[ASN][1000 genomes]
rs11029125	0.86[ASN][1000 genomes]
rs12221525	1.00[ASN][1000 genomes]
rs12223050	1.00[ASN][1000 genomes]
rs12226275	0.91[ASN][1000 genomes]
rs12273593	0.80[ASN][1000 genomes]
rs12295454	0.80[ASN][1000 genomes]
rs16925378	0.83[ASN][1000 genomes]
rs16925380	0.83[ASN][1000 genomes]
rs2231536	0.91[ASN][1000 genomes]
rs2271582	0.94[ASN][1000 genomes]
rs28562560	0.97[ASN][1000 genomes]
rs35123761	0.83[ASN][1000 genomes]
rs35136756	0.80[ASN][1000 genomes]
rs56720166	1.00[ASN][1000 genomes]
rs57019855	0.83[ASN][1000 genomes]
rs60928568	1.00[ASN][1000 genomes]
rs61878552	0.80[ASN][1000 genomes]
rs925696	0.83[ASN][1000 genomes]
rs925697	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047763	chr11:2918998-3751029	Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	esv2758252	chr11:3236512-3801429	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2759796	chr11:3236512-3801429	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv832051	chr11:3523947-3728714	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv1820972	chr11:3616884-3801429	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	esv1821329	chr11:3616884-3801429	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv832052	chr11:3616884-3801429	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv428247	chr11:3616884-3801429	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv526441	chr11:3626177-3756686	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv1046356	chr11:3628837-3774215	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
11	nsv1044345	chr11:3628912-3739222	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
12	nsv540906	chr11:3628912-3739222	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv1044419	chr11:3628912-3751029	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
14	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
15	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3671000-3686800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:3673000-3687200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:3676800-3685400	Weak transcription	Right Ventricle	heart
4	chr11:3679600-3685000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:3680200-3689400	Strong transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:3681000-3685600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:3681000-3687800	Weak transcription	A549	lung
8	chr11:3681400-3685400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:3681400-3685400	Weak transcription	Spleen	Spleen
10	chr11:3681400-3686400	Weak transcription	Pancreas	Pancrea
11	chr11:3681400-3691200	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:3681600-3685000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:3681600-3686000	Weak transcription	Fetal Brain Female	brain
14	chr11:3681800-3685200	Weak transcription	Fetal Intestine Small	intestine
15	chr11:3681800-3685200	Weak transcription	Fetal Stomach	stomach
16	chr11:3681800-3685400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:3681800-3685800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:3681800-3693200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:3682000-3685200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:3682000-3685200	Weak transcription	Brain Germinal Matrix	brain
21	chr11:3682000-3686600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:3682200-3685200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr11:3682200-3685400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr11:3682200-3685400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:3682400-3685200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr11:3682400-3685400	Weak transcription	Fetal Intestine Large	intestine
27	chr11:3682400-3685400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:3682400-3685800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr11:3682400-3697200	Weak transcription	Fetal Brain Male	brain
30	chr11:3682600-3685000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:3682600-3685200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr11:3682600-3685200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr11:3682600-3685400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:3682600-3685400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr11:3682600-3685400	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:3682600-3685400	Weak transcription	NHLF	lung
37	chr11:3682600-3685800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr11:3682600-3685800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr11:3682800-3685400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:3682800-3685400	Weak transcription	Brain Hippocampus Middle	brain
41	chr11:3682800-3685400	Weak transcription	NHEK	skin
42	chr11:3682800-3685600	Weak transcription	Primary T cells from cord blood	blood
43	chr11:3682800-3686400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr11:3682800-3688400	Weak transcription	Small Intestine	intestine
45	chr11:3683000-3685200	Weak transcription	Lung	lung
46	chr11:3683000-3685400	Weak transcription	Osteobl	bone
47	chr11:3683000-3685600	Weak transcription	Adipose Nuclei	Adipose
48	chr11:3683000-3685800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr11:3683000-3686600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr11:3683000-3686600	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links