Variant report

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:125861351..125863814-chr8:125873373..125876664,3	K562	blood:
2	chr8:125861710..125864506-chr8:125866256..125868160,3	K562	blood:
3	chr16:68268392..68270651-chr8:125859667..125862463,2	MCF-7	breast:
4	chr8:125736316..125742243-chr8:125861977..125870763,24	MCF-7	breast:
5	chr8:125624289..125626710-chr8:125861168..125862907,2	MCF-7	breast:
6	chr8:125861710..125864506-chr8:125866256..125867953,3	K562	blood:
7	chr8:125861812..125863734-chr8:126007944..126010716,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF572-1	chr8:125861987-125862459	ENSG00000249816

No data

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10093649	0.80[EUR][1000 genomes]
rs10111331	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10956219	0.90[EUR][1000 genomes]
rs10956220	0.90[EUR][1000 genomes]
rs11774426	0.91[EUR][1000 genomes]
rs11990757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11994576	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11994907	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12542397	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12547431	0.91[EUR][1000 genomes]
rs12549299	0.90[EUR][1000 genomes]
rs28446872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28460087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28731447	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4870928	0.89[EUR][1000 genomes]
rs4871558	0.90[EUR][1000 genomes]
rs4871560	0.90[EUR][1000 genomes]
rs6470288	0.89[EUR][1000 genomes]
rs6470289	0.91[EUR][1000 genomes]
rs6470290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470294	0.90[EUR][1000 genomes]
rs6988410	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6992468	0.91[EUR][1000 genomes]
rs7015626	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7460031	0.91[EUR][1000 genomes]
rs7463566	0.91[EUR][1000 genomes]
rs7835994	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125860400-125866000	Weak transcription	Esophagus	oesophagus
2	chr8:125861000-125863200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:125861000-125865400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:125861000-125865600	Weak transcription	Right Ventricle	heart
5	chr8:125861400-125863600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:125861400-125863600	Weak transcription	HepG2	liver
7	chr8:125861400-125866000	Weak transcription	Pancreas	Pancrea
8	chr8:125861400-125869000	Weak transcription	Ovary	ovary
9	chr8:125861800-125863000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr8:125862000-125862800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:125862000-125865600	Weak transcription	Fetal Heart	heart
12	chr8:125862200-125863400	Weak transcription	Left Ventricle	heart
13	chr8:125862200-125863400	Weak transcription	K562	blood
14	chr8:125862200-125866000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:125862200-125867200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:125862200-125868000	Weak transcription	HMEC	breast

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