Variant report

Variant	rs28600065
Chromosome Location	chr7:119292859-119292860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs17142322	0.91[AMR][1000 genomes]
rs2140567	0.91[AMR][1000 genomes]
rs2402487	0.82[AMR][1000 genomes]
rs28549838	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4610676	0.82[AMR][1000 genomes]
rs58473239	0.82[AMR][1000 genomes]
rs60495904	0.91[AMR][1000 genomes]
rs61081273	0.82[AMR][1000 genomes]
rs6964884	0.91[AMR][1000 genomes]
rs6975903	0.91[AMR][1000 genomes]
rs73485196	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73485199	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73487136	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73487146	0.91[AMR][1000 genomes]
rs73487152	0.91[AMR][1000 genomes]
rs73487156	0.91[AMR][1000 genomes]
rs73487158	0.91[AMR][1000 genomes]
rs73487167	0.82[AMR][1000 genomes]
rs73487175	0.91[AMR][1000 genomes]
rs73487178	0.91[AMR][1000 genomes]
rs73487193	0.91[AMR][1000 genomes]
rs73487195	0.91[AMR][1000 genomes]
rs73487201	0.91[AMR][1000 genomes]
rs73489103	0.91[AMR][1000 genomes]
rs73489107	0.91[AMR][1000 genomes]
rs73489137	0.82[AMR][1000 genomes]
rs73489143	0.82[AMR][1000 genomes]
rs7780733	0.91[AMR][1000 genomes]
rs7809848	0.82[AMR][1000 genomes]
rs882837	0.91[AMR][1000 genomes]
rs884489	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889115	chr7:119270386-119577292	ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1029023	chr7:119292763-119606632	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1023813	chr7:119292763-119606803	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119292800-119293400	ZNF genes & repeats	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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