Variant report

Variant	rs28600268
Chromosome Location	chr15:33159032-33159033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs34330936	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422296	chr15:32798938-33221215	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv832962	chr15:33111517-33239736	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv903978	chr15:33144202-33308641	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv903980	chr15:33149087-33264201	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33131800-33164800	Weak transcription	Pancreas	Pancrea
2	chr15:33138800-33190600	Weak transcription	Thymus	Thymus
3	chr15:33139600-33190600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:33142600-33168200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:33147000-33191400	Weak transcription	Lung	lung
6	chr15:33149000-33202000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:33149600-33169600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:33153800-33173200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr15:33154400-33159200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:33154400-33159200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:33154400-33160600	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr15:33154400-33164000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:33154400-33164600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:33154400-33173800	Weak transcription	Placenta	Placenta
15	chr15:33154400-33192800	Weak transcription	Colonic Mucosa	Colon
16	chr15:33154400-33216800	Weak transcription	Fetal Thymus	thymus
17	chr15:33155000-33208200	Weak transcription	Fetal Kidney	kidney
18	chr15:33155200-33160800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:33155200-33164400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:33155200-33164800	Weak transcription	Ovary	ovary
21	chr15:33156200-33159400	Weak transcription	HUVEC	blood vessel
22	chr15:33156600-33164000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:33157000-33159200	Weak transcription	HSMMtube	muscle
24	chr15:33157200-33163800	Weak transcription	Brain Angular Gyrus	brain
25	chr15:33157400-33163800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:33157800-33161200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:33158200-33159400	Enhancers	Fetal Lung	lung
28	chr15:33158200-33159400	Enhancers	Fetal Stomach	stomach
29	chr15:33158200-33160200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:33158600-33159200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr15:33158600-33159400	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr15:33158600-33159400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr15:33158600-33159400	Enhancers	Colon Smooth Muscle	Colon
34	chr15:33158600-33159600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:33158600-33159600	Enhancers	Stomach Smooth Muscle	stomach
36	chr15:33158600-33159600	Enhancers	HepG2	liver
37	chr15:33158600-33160200	Flanking Active TSS	A549	lung
38	chr15:33158600-33160200	Enhancers	NHDF-Ad	bronchial
39	chr15:33158600-33160200	Enhancers	NHLF	lung
40	chr15:33158600-33160800	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr15:33158800-33159200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:33158800-33159200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr15:33158800-33159200	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr15:33158800-33159400	Enhancers	Rectal Smooth Muscle	rectum
45	chr15:33158800-33159400	Enhancers	Stomach Mucosa	stomach
46	chr15:33158800-33159400	Enhancers	HSMM	muscle
47	chr15:33158800-33159600	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr15:33158800-33159600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr15:33158800-33159600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:33158800-33159600	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links