Variant report

Variant	rs28601756
Chromosome Location	chr15:59517629-59517630
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28663148	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4775136	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7167255	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7172761	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7174147	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8038705	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv904272	chr15:59500577-59549018	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv977071	chr15:59509537-59519089	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
2	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
3	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr15:59475800-59517800	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr15:59485600-59521200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:59487800-59524400	Weak transcription	Small Intestine	intestine
7	chr15:59492000-59521600	Strong transcription	Rectal Mucosa Donor 31	rectum
8	chr15:59493200-59523200	Strong transcription	Hela-S3	cervix
9	chr15:59496800-59522000	Strong transcription	NHEK	skin
10	chr15:59497000-59524800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:59498800-59522000	Strong transcription	GM12878-XiMat	blood
12	chr15:59500000-59524400	Weak transcription	Right Ventricle	heart
13	chr15:59500600-59524600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:59501200-59521400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:59501200-59523400	Weak transcription	Ovary	ovary
16	chr15:59501200-59525600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr15:59502800-59525800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:59503800-59518000	Strong transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:59504000-59520200	Strong transcription	Liver	Liver
20	chr15:59504800-59517800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr15:59505800-59518000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr15:59511400-59549200	Weak transcription	Colonic Mucosa	Colon
23	chr15:59512200-59521600	Strong transcription	Fetal Intestine Small	intestine
24	chr15:59512400-59518400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr15:59512600-59520000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:59513400-59517800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr15:59513400-59520200	Strong transcription	Primary B cells from peripheral blood	blood
28	chr15:59513400-59521600	Strong transcription	Fetal Intestine Large	intestine
29	chr15:59513800-59517800	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:59514200-59517800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:59514800-59521400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:59514800-59521400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr15:59514800-59524200	Weak transcription	Colon Smooth Muscle	Colon
34	chr15:59515000-59517800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr15:59515000-59517800	Genic enhancers	Left Ventricle	heart
36	chr15:59515000-59519200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:59515000-59524400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:59515200-59521400	Strong transcription	Osteobl	bone
39	chr15:59515400-59523800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr15:59515600-59521600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:59515800-59519800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr15:59515800-59522000	Strong transcription	HMEC	breast
43	chr15:59515800-59566600	Weak transcription	Pancreas	Pancrea
44	chr15:59516000-59519400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:59516200-59519400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:59516400-59518400	Enhancers	HUVEC	blood vessel
47	chr15:59516400-59519000	Weak transcription	NH-A	brain
48	chr15:59516400-59522800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:59516400-59524600	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr15:59516600-59517800	Genic enhancers	Brain Anterior Caudate	brain

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