Variant report
| Variant | rs2860448 |
|---|---|
| Chromosome Location | chr4:130828806-130828807 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1962166 | 0.94[EUR][1000 genomes] |
| rs2391515 | 0.95[CEU][hapmap];0.89[YRI][hapmap] |
| rs2391519 | 0.95[EUR][1000 genomes] |
| rs2391520 | 0.95[EUR][1000 genomes] |
| rs2391527 | 0.86[EUR][1000 genomes] |
| rs2860449 | 0.94[EUR][1000 genomes] |
| rs2952849 | 0.93[EUR][1000 genomes] |
| rs2952850 | 0.93[EUR][1000 genomes] |
| rs2952851 | 0.93[EUR][1000 genomes] |
| rs2952872 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2952877 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2952902 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2968940 | 0.93[EUR][1000 genomes] |
| rs2968942 | 0.95[EUR][1000 genomes] |
| rs2968943 | 0.95[EUR][1000 genomes] |
| rs2968944 | 0.95[EUR][1000 genomes] |
| rs2968947 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2968976 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2968977 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3111742 | 0.85[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9684007 | 0.82[EUR][1000 genomes] |
| rs9684612 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428770 | chr4:130692631-130863832 | Enhancers Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019516 | chr4:130754819-130976202 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3362562 | chr4:130827152-130829250 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:130828800-130829600 | Enhancers | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
