Variant report

Variant	rs28604952
Chromosome Location	chr8:105142811-105142812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104719235..104720149-chr8:105142112..105143028,4	MCF-7	breast:
2	chr8:104761856..104762718-chr8:105142470..105143058,2	MCF-7	breast:
3	chr8:104775998..104777146-chr8:105142053..105143087,6	MCF-7	breast:
4	chr8:105138025..105140468-chr8:105142058..105143910,2	K562	blood:
5	chr8:104807876..104808412-chr8:105142129..105143128,2	K562	blood:
6	chr8:104807373..104809649-chr8:105142104..105143087,16	MCF-7	breast:
7	chr8:105142189..105143073-chr8:105430071..105430902,5	MCF-7	breast:
8	chr8:105142223..105142821-chr8:105337869..105338754,2	MCF-7	breast:
9	chr8:104775882..104776978-chr8:105142360..105143119,4	MCF-7	breast:
10	chr8:104808988..104809567-chr8:105142388..105143010,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11991865	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1344068	0.93[EUR][1000 genomes]
rs16870935	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16870992	0.85[AMR][1000 genomes]
rs2441835	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2511632	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs28606600	0.85[AMR][1000 genomes]
rs4276655	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4409373	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4439090	0.90[EUR][1000 genomes]
rs4487720	0.85[AMR][1000 genomes]
rs6468901	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6468904	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7461951	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7812535	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7813596	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031195	chr8:104601231-105194208	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
2	esv1847227	chr8:105025912-105251147	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv891251	chr8:105054446-105283340	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv611835	chr8:105090980-105153786	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv891252	chr8:105106882-105227985	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1818798	chr8:105125672-105155544	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv831416	chr8:105137789-105296965	Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105115400-105150000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:105140400-105145400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:105142400-105143000	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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