Variant report

Variant	rs28607784
Chromosome Location	chr4:166441086-166441087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10004769	1.00[AFR][1000 genomes]
rs28530546	1.00[AFR][1000 genomes]
rs28674496	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508327	chr4:166424440-166475679	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166438800-166462000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:166439400-166443000	Weak transcription	Esophagus	oesophagus
3	chr4:166439800-166441200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:166439800-166441600	Enhancers	NHEK	skin
5	chr4:166440000-166441200	Enhancers	Adipose Nuclei	Adipose
6	chr4:166440000-166441600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:166440600-166445400	Weak transcription	Liver	Liver
8	chr4:166440800-166441400	Enhancers	Rectal Smooth Muscle	rectum
9	chr4:166440800-166441600	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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