Variant report

Variant	rs28608119
Chromosome Location	chr15:53096635-53096636
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53078999..53085478-chr15:53088216..53096885,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169856	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2289724	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2899500	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1041421	chr15:52661342-53148286	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1046970	chr15:53065114-53142386	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
4	nsv569428	chr15:53069874-53140045	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53095600-53096800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
2	chr15:53095600-53096800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
3	chr15:53095600-53097000	Bivalent Enhancer	Primary B cells from peripheral blood	blood
4	chr15:53095600-53097200	Bivalent Enhancer	Fetal Heart	heart
5	chr15:53095600-53097400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:53095600-53097800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr15:53095600-53098600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
8	chr15:53095600-53098800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr15:53095800-53096800	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
10	chr15:53095800-53096800	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:53095800-53096800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:53095800-53096800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:53095800-53096800	Bivalent Enhancer	Adipose Nuclei	Adipose
14	chr15:53095800-53096800	Bivalent Enhancer	Brain Hippocampus Middle	brain
15	chr15:53095800-53096800	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr15:53095800-53096800	Bivalent Enhancer	Ovary	ovary
17	chr15:53095800-53097000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:53095800-53097000	Bivalent Enhancer	Fetal Stomach	stomach
19	chr15:53095800-53097000	Bivalent/Poised TSS	Thymus	Thymus
20	chr15:53095800-53097200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr15:53095800-53097200	Bivalent Enhancer	Fetal Intestine Large	intestine
22	chr15:53095800-53097200	Bivalent Enhancer	Fetal Thymus	thymus
23	chr15:53095800-53097200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
24	chr15:53095800-53097400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
25	chr15:53095800-53097400	Bivalent Enhancer	Left Ventricle	heart
26	chr15:53095800-53097800	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:53095800-53097800	Active TSS	Pancreas	Pancrea
28	chr15:53095800-53097800	Bivalent/Poised TSS	Psoas Muscle	Psoas
29	chr15:53095800-53098400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr15:53095800-53098800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr15:53096000-53096800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
32	chr15:53096000-53096800	Bivalent Enhancer	Fetal Brain Female	brain
33	chr15:53096000-53096800	Enhancers	Gastric	stomach
34	chr15:53096000-53096800	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
35	chr15:53096000-53096800	Bivalent/Poised TSS	NHEK	skin
36	chr15:53096000-53097000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
37	chr15:53096000-53097200	Bivalent Enhancer	Esophagus	oesophagus
38	chr15:53096000-53097200	Bivalent Enhancer	Fetal Intestine Small	intestine
39	chr15:53096000-53098400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
40	chr15:53096000-53098400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
41	chr15:53096000-53098400	Bivalent Enhancer	Fetal Brain Male	brain
42	chr15:53096000-53098600	Active TSS	H9 Cell Line	embryonic stem cell
43	chr15:53096000-53098600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
44	chr15:53096000-53098600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr15:53096200-53096800	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:53096200-53096800	Bivalent Enhancer	Primary B cells from cord blood	blood
47	chr15:53096200-53096800	Bivalent Enhancer	Primary T cells from cord blood	blood
48	chr15:53096200-53096800	Bivalent Enhancer	Primary hematopoietic stem cells	blood
49	chr15:53096200-53096800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
50	chr15:53096200-53096800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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