Variant report

Variant	rs2860869
Chromosome Location	chr2:77020328-77020329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11883849	0.87[CHB][hapmap]
rs11884591	0.87[CHB][hapmap]
rs11887438	0.81[CEU][hapmap];0.80[CHB][hapmap]
rs1517774	0.86[CHB][hapmap]
rs1914508	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs4387822	0.87[CHB][hapmap]
rs4853273	0.93[CHB][hapmap];0.82[ASN][1000 genomes]
rs55808616	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6547100	0.87[CHB][hapmap]
rs6710637	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6718129	0.95[YRI][hapmap]
rs6726270	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs6747148	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs72815445	0.90[AFR][1000 genomes]
rs72919678	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7561233	0.92[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs7580043	0.87[CHB][hapmap]
rs7607547	0.87[CHB][hapmap]
rs977744	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011401	chr2:76982546-77068714	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv999822	chr2:76994539-77022762	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
3	nsv1005091	chr2:77009508-77112403	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77009000-77039000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:77009400-77022600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr2:77009600-77038200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:77014200-77023800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:77020000-77020400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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