Variant report

Variant	rs2861173
Chromosome Location	chr2:66928530-66928531
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2861174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6546262	1.00[EUR][1000 genomes]
rs6711221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73935933	1.00[EUR][1000 genomes]
rs7605171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834248	chr2:66756873-66970378	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1012523	chr2:66919704-66961372	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv979386	chr2:66923587-66929224	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:66919200-66929000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:66924600-66929000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:66924800-66929000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:66924800-66929800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr2:66925000-66929600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr2:66925200-66928800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:66925200-66929000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:66925600-66929200	Enhancers	Colon Smooth Muscle	Colon
9	chr2:66926400-66932200	Enhancers	Fetal Lung	lung
10	chr2:66927200-66930000	Enhancers	Brain Germinal Matrix	brain
11	chr2:66927200-66936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:66927400-66929000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:66927600-66929400	Weak transcription	Fetal Intestine Large	intestine
14	chr2:66927600-66930000	Enhancers	Fetal Kidney	kidney
15	chr2:66927600-66930200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr2:66927600-66931800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:66927600-66932000	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:66927800-66928800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr2:66927800-66928800	Weak transcription	Fetal Stomach	stomach
20	chr2:66927800-66929000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr2:66927800-66929400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr2:66928000-66929600	Weak transcription	Stomach Mucosa	stomach
23	chr2:66928200-66929400	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links