Variant report

Variant	rs28613623
Chromosome Location	chr4:85354402-85354403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11725830	0.82[EUR][1000 genomes]
rs13125585	0.82[EUR][1000 genomes]
rs1444975	0.84[EUR][1000 genomes]
rs1444978	0.84[EUR][1000 genomes]
rs1867546	0.80[EUR][1000 genomes]
rs1867547	0.80[EUR][1000 genomes]
rs61714578	0.83[EUR][1000 genomes]
rs752399	0.83[EUR][1000 genomes]
rs752401	0.80[EUR][1000 genomes]
rs7657410	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7663470	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7673608	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs977463	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85353600-85354600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:85354400-85354800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:85354400-85355000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:85354400-85356000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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