Variant report

Variant	rs28613732
Chromosome Location	chr9:21935807-21935808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2188126	0.88[ASN][1000 genomes]
rs7021848	0.81[ASN][1000 genomes]
rs7036999	1.00[EUR][1000 genomes]
rs7875199	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv892745	chr9:21857244-22006273	Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1821117	chr9:21933029-22012229	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21920600-21942600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:21931400-21937400	Weak transcription	Pancreas	Pancrea
3	chr9:21931800-21938000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr9:21932600-21939000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr9:21933600-21936200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr9:21934400-21937800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:21935400-21936000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:21935400-21936200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr9:21935400-21936200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:21935400-21936200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:21935400-21936400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr9:21935600-21936000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr9:21935600-21936200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr9:21935600-21936200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr9:21935800-21936000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr9:21935800-21936000	ZNF genes & repeats	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links