Variant report

Variant	rs28615513
Chromosome Location	chr15:40832679-40832680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40825965..40829345-chr15:40829678..40833688,6	K562	blood:
2	chr15:40825263..40828833-chr15:40829678..40833530,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28421335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28510774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35951300	1.00[AMR][1000 genomes]
rs73384329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73384343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73386627	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2758378	chr15:40832545-40995111	Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv2760026	chr15:40832545-40995111	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40805200-40833000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:40812400-40837800	Weak transcription	Lung	lung
3	chr15:40812600-40840600	Weak transcription	Hela-S3	cervix
4	chr15:40816800-40835000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:40816800-40845600	Weak transcription	Ovary	ovary
6	chr15:40819600-40845000	Weak transcription	Pancreas	Pancrea
7	chr15:40820800-40833800	Weak transcription	K562	blood
8	chr15:40821400-40836800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:40821400-40848000	Weak transcription	Brain Anterior Caudate	brain
10	chr15:40821800-40840400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:40821800-40856400	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:40822600-40856400	Weak transcription	Small Intestine	intestine
13	chr15:40823200-40839600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr15:40823800-40841800	Weak transcription	Brain Substantia Nigra	brain
15	chr15:40824800-40842600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:40825000-40836200	Weak transcription	Primary hematopoietic stem cells	blood
17	chr15:40825600-40839400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:40825600-40840000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:40825800-40839200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr15:40825800-40839600	Weak transcription	NHEK	skin
21	chr15:40827200-40833000	Weak transcription	GM12878-XiMat	blood
22	chr15:40827600-40842000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:40827800-40835400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr15:40827800-40839200	Weak transcription	Fetal Thymus	thymus
25	chr15:40828000-40836200	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr15:40828000-40856600	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr15:40828200-40833400	Strong transcription	Spleen	Spleen
28	chr15:40828400-40839200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:40828600-40839400	Weak transcription	HMEC	breast
30	chr15:40828600-40841600	Weak transcription	Colonic Mucosa	Colon
31	chr15:40828800-40839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:40828800-40839200	Weak transcription	Liver	Liver
33	chr15:40828800-40839200	Weak transcription	Esophagus	oesophagus
34	chr15:40828800-40839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:40829000-40841400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr15:40829200-40833200	Strong transcription	Fetal Intestine Small	intestine
37	chr15:40829200-40845200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:40829400-40839200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr15:40829400-40839600	Weak transcription	Fetal Brain Female	brain
40	chr15:40829400-40840800	Weak transcription	Fetal Lung	lung
41	chr15:40829400-40845000	Weak transcription	NHLF	lung
42	chr15:40829600-40835800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:40829600-40839200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr15:40829600-40839600	Weak transcription	Right Atrium	heart
45	chr15:40829600-40840400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:40829600-40840800	Weak transcription	Osteobl	bone
47	chr15:40829600-40845000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr15:40829600-40845200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:40829800-40833400	Strong transcription	Fetal Stomach	stomach
50	chr15:40829800-40839000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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