Variant report

Variant	rs2861576
Chromosome Location	chr10:98120183-98120184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10736107	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10748673	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786281	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786282	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882777	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882778	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10882779	0.83[EUR][1000 genomes]
rs10882781	0.81[EUR][1000 genomes]
rs11188734	0.83[EUR][1000 genomes]
rs11188735	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188736	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901990	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814223	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7077344	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv831950	chr10:98080972-98245434	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98106200-98126000	Weak transcription	Aorta	Aorta
2	chr10:98117000-98123800	Weak transcription	Right Atrium	heart
3	chr10:98117000-98134400	Weak transcription	Thymus	Thymus
4	chr10:98118800-98130200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:98119200-98121200	Enhancers	Brain Anterior Caudate	brain
6	chr10:98119400-98120400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr10:98119400-98120400	Enhancers	Brain Substantia Nigra	brain
8	chr10:98119600-98121200	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:98119800-98121400	Enhancers	Brain Hippocampus Middle	brain
10	chr10:98120000-98125000	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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