Variant report

Variant	rs28615872
Chromosome Location	chr4:96297335-96297336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10222858	0.88[ASN][1000 genomes]
rs1351770	0.81[ASN][1000 genomes]
rs17023617	0.84[EUR][1000 genomes]
rs17023624	0.86[EUR][1000 genomes]
rs17023627	0.86[EUR][1000 genomes]
rs17023654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28475150	0.85[EUR][1000 genomes]
rs28555153	0.92[ASN][1000 genomes]
rs66625786	0.85[EUR][1000 genomes]
rs67577599	0.86[EUR][1000 genomes]
rs6822806	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6845966	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6848909	0.85[EUR][1000 genomes]
rs6856205	0.85[ASN][1000 genomes]
rs9991852	0.85[EUR][1000 genomes]
rs9998018	0.85[ASN][1000 genomes]
rs9999043	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3431304	chr4:96295779-96299277	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
2	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:96293400-96298000	Weak transcription	Brain Angular Gyrus	brain
4	chr4:96293400-96298200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:96293400-96303400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:96293600-96298000	Weak transcription	Brain Anterior Caudate	brain
7	chr4:96293600-96298200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:96294200-96297800	Weak transcription	Brain Substantia Nigra	brain
9	chr4:96294800-96298000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr4:96295200-96298000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:96295400-96302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:96295400-96302400	Weak transcription	Fetal Lung	lung
13	chr4:96295800-96305400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:96296400-96316000	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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