Variant report

Variant	rs28615993
Chromosome Location	chr9:7118730-7118731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10114306	1.00[EUR][1000 genomes]
rs10114363	1.00[EUR][1000 genomes]
rs10115436	1.00[EUR][1000 genomes]
rs10118513	1.00[AMR][1000 genomes]
rs10123010	1.00[AMR][1000 genomes]
rs10124436	1.00[AMR][1000 genomes]
rs10976015	1.00[EUR][1000 genomes]
rs10976064	1.00[AMR][1000 genomes]
rs12338816	1.00[EUR][1000 genomes]
rs12340278	1.00[EUR][1000 genomes]
rs12340567	1.00[EUR][1000 genomes]
rs12342913	1.00[EUR][1000 genomes]
rs12343768	1.00[AMR][1000 genomes]
rs12344683	1.00[EUR][1000 genomes]
rs12347341	1.00[EUR][1000 genomes]
rs12348602	1.00[AMR][1000 genomes]
rs12350651	1.00[EUR][1000 genomes]
rs12351031	1.00[EUR][1000 genomes]
rs12352705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12352738	1.00[EUR][1000 genomes]
rs16925444	1.00[EUR][1000 genomes]
rs28363911	1.00[EUR][1000 genomes]
rs28416711	1.00[EUR][1000 genomes]
rs28647758	1.00[AMR][1000 genomes]
rs28681195	1.00[AMR][1000 genomes]
rs35006356	1.00[EUR][1000 genomes]
rs58724848	1.00[EUR][1000 genomes]
rs59299770	1.00[EUR][1000 genomes]
rs60487710	1.00[EUR][1000 genomes]
rs6477157	1.00[EUR][1000 genomes]
rs7019191	1.00[EUR][1000 genomes]
rs7022137	1.00[EUR][1000 genomes]
rs7023243	1.00[EUR][1000 genomes]
rs7044432	1.00[EUR][1000 genomes]
rs73402769	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892166	chr9:6602821-7222495	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1023906	chr9:6731786-7372132	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv613259	chr9:7032776-7541338	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1015874	chr9:7048807-7434890	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv539971	chr9:7048807-7434890	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv869932	chr9:7068359-7133384	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv892189	chr9:7091968-7150997	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv892190	chr9:7094860-7186074	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7088800-7128000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr9:7100800-7120200	Strong transcription	Primary B cells from cord blood	blood
3	chr9:7103000-7148600	Strong transcription	Primary B cells from peripheral blood	blood
4	chr9:7103800-7128800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:7104000-7121200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr9:7104200-7123600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:7104200-7128200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:7104200-7148200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:7104400-7121200	Weak transcription	Esophagus	oesophagus
10	chr9:7104400-7121200	Weak transcription	Pancreas	Pancrea
11	chr9:7104400-7123600	Weak transcription	Gastric	stomach
12	chr9:7104400-7128000	Weak transcription	Aorta	Aorta
13	chr9:7104400-7128000	Weak transcription	Lung	lung
14	chr9:7104400-7135400	Weak transcription	Fetal Muscle Leg	muscle
15	chr9:7104400-7137600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:7104400-7144600	Weak transcription	Brain Anterior Caudate	brain
17	chr9:7104600-7148000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr9:7104800-7120000	Weak transcription	Small Intestine	intestine
19	chr9:7104800-7123400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:7104800-7138200	Weak transcription	HSMM	muscle
21	chr9:7104800-7142800	Weak transcription	Osteobl	bone
22	chr9:7104800-7153200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr9:7105000-7121400	Weak transcription	Spleen	Spleen
24	chr9:7105000-7133600	Weak transcription	Fetal Stomach	stomach
25	chr9:7105000-7146600	Weak transcription	Rectal Smooth Muscle	rectum
26	chr9:7105200-7123800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:7105200-7130200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:7105400-7118800	Weak transcription	Psoas Muscle	Psoas
29	chr9:7105400-7120200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr9:7105400-7120600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr9:7105400-7121600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr9:7105400-7128200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr9:7105600-7121200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr9:7105600-7123400	Weak transcription	HepG2	liver
35	chr9:7105600-7123600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr9:7105600-7128200	Weak transcription	Brain Hippocampus Middle	brain
37	chr9:7105600-7133200	Weak transcription	Ovary	ovary
38	chr9:7105600-7136800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:7105800-7121200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr9:7105800-7128200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:7105800-7128200	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:7105800-7128400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:7105800-7128600	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr9:7105800-7129400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr9:7106000-7121000	Weak transcription	K562	blood
46	chr9:7106000-7121200	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr9:7106000-7121400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr9:7106000-7123400	Weak transcription	Adipose Nuclei	Adipose
49	chr9:7106200-7147600	Weak transcription	Fetal Muscle Trunk	muscle
50	chr9:7107800-7123600	Weak transcription	Liver	Liver

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