Variant report

Variant	rs2861639
Chromosome Location	chr2:67779919-67779920
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11126134	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11126138	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11900280	0.85[AMR][1000 genomes]
rs1430789	0.80[AMR][1000 genomes]
rs1430790	0.83[AMR][1000 genomes]
rs1430791	0.83[AMR][1000 genomes]
rs1430792	0.83[AMR][1000 genomes]
rs17033765	0.96[ASN][1000 genomes]
rs2861640	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2861644	0.80[AMR][1000 genomes]
rs2861645	0.83[AMR][1000 genomes]
rs2861648	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2861681	0.88[AMR][1000 genomes]
rs2861686	0.85[AMR][1000 genomes]
rs2861687	0.83[AMR][1000 genomes]
rs2861689	0.80[AMR][1000 genomes]
rs2861695	0.83[AMR][1000 genomes]
rs2861698	0.88[AMR][1000 genomes]
rs2861700	0.83[AMR][1000 genomes]
rs2861701	0.88[AMR][1000 genomes]
rs2861703	0.83[AMR][1000 genomes]
rs2902007	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2902008	0.88[AMR][1000 genomes]
rs2902023	0.88[AMR][1000 genomes]
rs2902025	0.85[AMR][1000 genomes]
rs4233939	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4362541	0.80[AMR][1000 genomes]
rs4381768	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4410279	0.88[AMR][1000 genomes]
rs4533457	0.88[AMR][1000 genomes]
rs4671806	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4671811	0.83[AMR][1000 genomes]
rs4671812	0.80[AMR][1000 genomes]
rs4671813	0.85[AMR][1000 genomes]
rs4671817	0.80[AMR][1000 genomes]
rs6546317	0.83[AMR][1000 genomes]
rs6546320	0.83[AMR][1000 genomes]
rs6546322	0.88[AMR][1000 genomes]
rs6724133	0.88[AMR][1000 genomes]
rs6730286	0.83[AMR][1000 genomes]
rs6746394	0.80[AMR][1000 genomes]
rs6752799	0.88[AMR][1000 genomes]
rs72899978	0.96[ASN][1000 genomes]
rs7425711	0.88[AMR][1000 genomes]
rs7598280	0.83[AMR][1000 genomes]
rs9309402	0.80[AMR][1000 genomes]
rs980227	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67776200-67787200	Weak transcription	Pancreas	Pancrea
2	chr2:67776200-67787600	Weak transcription	Left Ventricle	heart
3	chr2:67776400-67788600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:67776600-67780000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links