Variant report

Variant	rs2861702
Chromosome Location	chr2:67856002-67856003
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11126139	0.80[AMR][1000 genomes]
rs11679082	0.81[AMR][1000 genomes]
rs11680000	0.81[AMR][1000 genomes]
rs11680926	0.80[AMR][1000 genomes]
rs11693956	0.81[AMR][1000 genomes]
rs2861650	0.81[AMR][1000 genomes]
rs2861651	0.81[AMR][1000 genomes]
rs2861688	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2861692	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2861693	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2861696	0.82[AMR][1000 genomes]
rs4368311	0.80[AMR][1000 genomes]
rs4591326	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61004148	0.82[AMR][1000 genomes]
rs72621574	0.81[AMR][1000 genomes]
rs9309400	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3329125	chr2:67855920-67856146	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67854600-67860000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:67854600-67860200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:67856000-67856200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links