Variant report

Variant	rs28619162
Chromosome Location	chr4:119128945-119128946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10002349	1.00[AMR][1000 genomes]
rs10003652	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10005659	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10007553	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10018706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10024548	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025515	1.00[AMR][1000 genomes]
rs10028823	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10030057	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031402	1.00[AMR][1000 genomes]
rs11931409	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11946772	0.89[AFR][1000 genomes]
rs13434557	1.00[AMR][1000 genomes]
rs28421577	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28451256	1.00[AMR][1000 genomes]
rs28484271	1.00[AMR][1000 genomes]
rs28558085	1.00[AMR][1000 genomes]
rs28567841	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28576396	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582030	1.00[AMR][1000 genomes]
rs28585079	1.00[AMR][1000 genomes]
rs28610040	1.00[AMR][1000 genomes]
rs28634343	1.00[AMR][1000 genomes]
rs28665169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28667620	1.00[AMR][1000 genomes]
rs28669076	1.00[AMR][1000 genomes]
rs28682376	1.00[AMR][1000 genomes]
rs28706008	1.00[AMR][1000 genomes]
rs28715892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28735538	1.00[AMR][1000 genomes]
rs28740899	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28771156	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28776305	1.00[AMR][1000 genomes]
rs28823876	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28847597	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28886020	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57461354	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307456	1.00[AMR][1000 genomes]
rs9994181	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:82 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519017	chr4:118828807-119771481	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1009076	chr4:118949490-119269424	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1001236	chr4:118949490-119271243	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv1008236	chr4:118989467-119154024	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv999152	chr4:119001143-119138322	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv34038	chr4:119035124-119455391	Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv1001138	chr4:119095147-119461837	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
8	nsv537230	chr4:119095147-119461837	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv4485	chr4:119103349-119144334	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3524414	chr4:119106398-119131703	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
11	esv3524415	chr4:119106398-119131703	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS	TF binding region	1 gene(s)	inside rSNPs	n/a
12	nsv595283	chr4:119114424-119130109	Weak transcription Enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
13	nsv511250	chr4:119115366-119134308	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
14	nsv966561	chr4:119115482-119130733	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
15	nsv10556	chr4:119115884-119130544	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
16	nsv595284	chr4:119117533-119129669	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	n/a
17	nsv595285	chr4:119117533-119130109	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
18	nsv820226	chr4:119120959-119130329	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
19	nsv595288	chr4:119121731-119129669	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
20	nsv595289	chr4:119121731-119129949	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
21	nsv595290	chr4:119121731-119130109	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
22	esv3466068	chr4:119123504-119132102	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
23	esv3529961	chr4:119124154-119131352	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
24	esv3529958	chr4:119124654-119131252	Enhancers ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	inside rSNPs	n/a
25	nsv513162	chr4:119124748-119130407	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
26	esv3466065	chr4:119125280-119130307	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
27	esv3529959	chr4:119125310-119130313	Weak transcription Strong transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
28	esv3529963	chr4:119125316-119130297	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
29	esv3466067	chr4:119125325-119130269	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
30	esv3529965	chr4:119125329-119130238	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
31	esv3466062	chr4:119125335-119130273	Strong transcription Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
32	esv3466066	chr4:119125349-119130227	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
33	esv3529957	chr4:119125354-119130250	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
34	nsv1002771	chr4:119125361-119571237	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
35	esv3529960	chr4:119125362-119130249	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
36	esv3466061	chr4:119125398-119130204	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
37	esv3529962	chr4:119125408-119130206	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
38	nsv499064	chr4:119125411-119130204	Enhancers ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
39	nsv291334	chr4:119125412-119130199	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
40	esv3466069	chr4:119125412-119130204	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
41	esv3529966	chr4:119125412-119130204	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
42	esv20674	chr4:119125696-119130309	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
43	nsv822706	chr4:119125723-119130199	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
44	nsv514247	chr4:119125920-119130280	Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
45	nsv822707	chr4:119125937-119130133	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
46	nsv822708	chr4:119125937-119130199	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a
47	nsv595294	chr4:119126335-119129124	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
48	nsv595295	chr4:119126335-119129405	Weak transcription Enhancers Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
49	nsv595296	chr4:119126335-119129455	ZNF genes & repeats Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a
50	nsv595297	chr4:119126335-119129669	Enhancers Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119126800-119129600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:119127600-119131200	Strong transcription	Dnd41	blood
3	chr4:119128400-119129000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:119128600-119129000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:119128600-119129200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr4:119128600-119129800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:119128800-119129000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:119128800-119130000	Enhancers	HUES6 Cell Line	embryonic stem cell

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