Variant report

Variant	rs28619941
Chromosome Location	chr8:126650763-126650764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126566453..126569112-chr8:126648865..126651247,2	MCF-7	breast:
2	chr8:126442421..126446829-chr8:126648342..126652511,5	MCF-7	breast:
3	chr8:126441757..126444291-chr8:126648551..126653388,7	MCF-7	breast:
4	chr8:126646289..126648131-chr8:126648372..126651267,2	MCF-7	breast:
5	chr8:126555206..126556757-chr8:126649340..126651387,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

rs_ID	r²[population]
rs35381326	1.00[EUR][1000 genomes]
rs60454155	1.00[EUR][1000 genomes]
rs73346849	1.00[EUR][1000 genomes]

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126639600-126653600	Weak transcription	Pancreas	Pancrea
2	chr8:126647600-126652200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:126648000-126651000	Enhancers	Primary B cells from cord blood	blood
4	chr8:126648200-126651000	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr8:126648600-126651400	Enhancers	HepG2	liver
6	chr8:126648600-126651800	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr8:126648800-126650800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr8:126648800-126651200	Enhancers	Lung	lung
9	chr8:126648800-126651400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:126648800-126651400	Enhancers	Placenta	Placenta
11	chr8:126648800-126651400	Enhancers	Spleen	Spleen
12	chr8:126649000-126651200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr8:126649000-126651200	Enhancers	NHLF	lung
14	chr8:126649000-126651600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:126649000-126653600	Weak transcription	Colonic Mucosa	Colon
16	chr8:126649200-126650800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr8:126649200-126651000	Enhancers	NHDF-Ad	bronchial
18	chr8:126649200-126651000	Enhancers	Osteobl	bone
19	chr8:126649200-126651200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr8:126649200-126652200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:126649200-126654400	Enhancers	HUVEC	blood vessel
22	chr8:126649400-126650800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr8:126649400-126651200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:126649400-126651200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:126649400-126651200	Enhancers	Adipose Nuclei	Adipose
26	chr8:126649400-126651400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr8:126649600-126651200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:126649600-126651400	Enhancers	Fetal Muscle Trunk	muscle
29	chr8:126649600-126653400	Weak transcription	Psoas Muscle	Psoas
30	chr8:126649600-126653600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr8:126649600-126653800	Weak transcription	Fetal Intestine Small	intestine
32	chr8:126649800-126650800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr8:126649800-126651200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:126649800-126651200	Enhancers	NH-A	brain
35	chr8:126649800-126651400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr8:126649800-126652200	Enhancers	GM12878-XiMat	blood
37	chr8:126649800-126653400	Weak transcription	Brain Anterior Caudate	brain
38	chr8:126649800-126653400	Weak transcription	Fetal Thymus	thymus
39	chr8:126649800-126653600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr8:126649800-126653600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr8:126649800-126653600	Weak transcription	Duodenum Mucosa	Duodenum
42	chr8:126649800-126653600	Weak transcription	Esophagus	oesophagus
43	chr8:126649800-126653600	Weak transcription	Fetal Intestine Large	intestine
44	chr8:126649800-126653600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr8:126649800-126655200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr8:126649800-126656600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr8:126649800-126656600	Weak transcription	Stomach Mucosa	stomach
48	chr8:126649800-126660400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr8:126650000-126653400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr8:126650000-126653400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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