Variant report

Variant	rs28620420
Chromosome Location	chr6:132129236-132129237
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132128149..132132112-chr6:132147030..132152072,5	MCF-7	breast:
2	chr6:132127914..132130474-chr8:77911866..77914153,2	MCF-7	breast:
3	chr6:132127756..132130246-chr6:132148008..132150797,2	MCF-7	breast:
4	chr6:132126867..132133246-chr6:132138030..132146402,10	MCF-7	breast:
5	chr6:132126588..132131688-chr6:132138399..132143000,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000219532	Chromatin interaction
ENSG00000237115	Chromatin interaction
ENSG00000200895	Chromatin interaction
ENSG00000164751	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv886670	chr6:132071193-132193395	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv886671	chr6:132071193-132203432	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv5479	chr6:132101897-132136593	Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	esv3423490	chr6:132127884-132130632	Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a
8	esv3434209	chr6:132128409-132130407	Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132128000-132130400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr6:132128200-132129400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:132128200-132129400	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
4	chr6:132128200-132129600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:132128200-132129600	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:132128200-132129600	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr6:132128200-132129800	Active TSS	Brain Angular Gyrus	brain
8	chr6:132128200-132129800	Active TSS	Brain Hippocampus Middle	brain
9	chr6:132128200-132130000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:132128200-132130000	Active TSS	Fetal Kidney	kidney
11	chr6:132128200-132130200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:132128200-132130200	Active TSS	Brain Anterior Caudate	brain
13	chr6:132128200-132130200	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr6:132128200-132130200	Active TSS	Stomach Smooth Muscle	stomach
15	chr6:132128200-132130400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:132128200-132130800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:132128400-132129400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr6:132128400-132129400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:132128400-132129400	Active TSS	Brain Germinal Matrix	brain
20	chr6:132128400-132129400	Active TSS	Fetal Brain Female	brain
21	chr6:132128400-132129400	Active TSS	HMEC	breast
22	chr6:132128400-132129600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:132128400-132129600	Active TSS	H9 Cell Line	embryonic stem cell
24	chr6:132128400-132129600	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr6:132128400-132129600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:132128400-132129600	Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr6:132128400-132129600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:132128400-132129600	Active TSS	Colon Smooth Muscle	Colon
29	chr6:132128400-132129600	Active TSS	Rectal Smooth Muscle	rectum
30	chr6:132128400-132129800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:132128400-132129800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
32	chr6:132128400-132129800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:132128400-132129800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:132128400-132129800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
35	chr6:132128400-132129800	Active TSS	Right Ventricle	heart
36	chr6:132128400-132130000	Active TSS	H1 Cell Line	embryonic stem cell
37	chr6:132128400-132130000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr6:132128400-132130000	Active TSS	Brain Substantia Nigra	brain
39	chr6:132128400-132130000	Active TSS	Fetal Intestine Large	intestine
40	chr6:132128400-132130000	Active TSS	Ovary	ovary
41	chr6:132128400-132130200	Active TSS	Left Ventricle	heart
42	chr6:132128400-132130200	Active TSS	Pancreas	Pancrea
43	chr6:132128400-132130200	Active TSS	Psoas Muscle	Psoas
44	chr6:132128400-132130200	Active TSS	Right Atrium	heart
45	chr6:132128400-132130200	Bivalent/Poised TSS	Thymus	Thymus
46	chr6:132128400-132130400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr6:132128400-132130400	Active TSS	Aorta	Aorta
48	chr6:132128400-132130600	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr6:132128600-132129400	Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr6:132128600-132129600	Active TSS	HUES48 Cell Line	embryonic stem cell

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