Variant report

Variant	rs28621926
Chromosome Location	chr1:58086697-58086698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10493229	1.00[EUR][1000 genomes]
rs10889057	1.00[EUR][1000 genomes]
rs11207053	1.00[EUR][1000 genomes]
rs11803909	1.00[EUR][1000 genomes]
rs11805586	1.00[EUR][1000 genomes]
rs11810273	1.00[EUR][1000 genomes]
rs12067444	1.00[EUR][1000 genomes]
rs12067490	1.00[EUR][1000 genomes]
rs1341311	1.00[EUR][1000 genomes]
rs1524706	1.00[EUR][1000 genomes]
rs1524712	1.00[EUR][1000 genomes]
rs1524731	1.00[EUR][1000 genomes]
rs1534048	1.00[EUR][1000 genomes]
rs1815685	1.00[EUR][1000 genomes]
rs1880442	1.00[EUR][1000 genomes]
rs1935045	1.00[EUR][1000 genomes]
rs2204376	1.00[EUR][1000 genomes]
rs2265623	1.00[EUR][1000 genomes]
rs2691443	1.00[EUR][1000 genomes]
rs2691444	1.00[EUR][1000 genomes]
rs2691445	1.00[EUR][1000 genomes]
rs2691447	1.00[EUR][1000 genomes]
rs2691448	1.00[EUR][1000 genomes]
rs2691455	1.00[EUR][1000 genomes]
rs2793641	1.00[EUR][1000 genomes]
rs2805850	1.00[EUR][1000 genomes]
rs2805851	1.00[EUR][1000 genomes]
rs28391765	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4310463	1.00[EUR][1000 genomes]
rs4348747	1.00[EUR][1000 genomes]
rs4526638	1.00[EUR][1000 genomes]
rs4529731	1.00[EUR][1000 genomes]
rs4553222	1.00[EUR][1000 genomes]
rs4554738	1.00[EUR][1000 genomes]
rs56873272	1.00[EUR][1000 genomes]
rs58873103	1.00[EUR][1000 genomes]
rs60116819	1.00[EUR][1000 genomes]
rs60867983	1.00[EUR][1000 genomes]
rs72908597	1.00[EUR][1000 genomes]
rs7551052	1.00[EUR][1000 genomes]
rs947237	1.00[EUR][1000 genomes]
rs947238	1.00[EUR][1000 genomes]
rs947241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012555	chr1:57950355-58103389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv523574	chr1:58018103-58087789	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv871684	chr1:58021206-58096379	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58066000-58089000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:58066400-58089400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:58081200-58090600	Enhancers	Fetal Heart	heart
4	chr1:58081600-58089800	Enhancers	Fetal Muscle Leg	muscle
5	chr1:58083400-58088800	Weak transcription	HSMMtube	muscle
6	chr1:58084800-58086800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:58085400-58086800	Enhancers	Right Ventricle	heart
8	chr1:58085400-58093600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:58085600-58086800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:58085800-58087000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:58085800-58087400	Enhancers	Ovary	ovary
12	chr1:58086000-58087000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:58086200-58086800	Enhancers	Left Ventricle	heart
14	chr1:58086200-58087000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:58086200-58089800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr1:58086400-58086800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:58086400-58086800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:58086400-58086800	Enhancers	Right Atrium	heart
19	chr1:58086400-58086800	Enhancers	HepG2	liver
20	chr1:58086400-58087000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:58086400-58088200	Weak transcription	Fetal Lung	lung
22	chr1:58086400-58089600	Enhancers	Fetal Brain Male	brain
23	chr1:58086600-58086800	Enhancers	H9 Cell Line	embryonic stem cell
24	chr1:58086600-58086800	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr1:58086600-58086800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr1:58086600-58087000	Enhancers	Fetal Kidney	kidney
27	chr1:58086600-58087000	Weak transcription	Spleen	Spleen
28	chr1:58086600-58088400	Weak transcription	Fetal Brain Female	brain

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