Variant report

Variant	rs28623615
Chromosome Location	chr4:31292923-31292924
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10031398	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434960	1.00[AFR][1000 genomes]
rs28626374	1.00[AMR][1000 genomes]
rs28667195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9998579	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998450	chr4:30823631-31628179	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1007884	chr4:31071934-31680623	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1007145	chr4:31079681-31670541	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv491749	chr4:31103307-31645668	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv878812	chr4:31202669-31354090	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:31292200-31293200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:31292200-31293600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:31292400-31293000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr4:31292400-31293200	Enhancers	Fetal Intestine Large	intestine
5	chr4:31292400-31293200	Enhancers	Fetal Intestine Small	intestine
6	chr4:31292400-31293800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr4:31292600-31293000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr4:31292600-31293400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:31292600-31293400	Enhancers	GM12878-XiMat	blood
10	chr4:31292600-31293600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr4:31292800-31293200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr4:31292800-31293200	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links