Variant report

Variant	rs28625109
Chromosome Location	chr8:19732587-19732588
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10098182	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1031046	0.86[AFR][1000 genomes]
rs1441767	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1561747	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1561748	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2197088	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6586875	0.83[EUR][1000 genomes]
rs717834	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7818070	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7830586	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv890631	chr8:19712564-19756813	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19728000-19732800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:19728200-19733400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr8:19728200-19734000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:19728400-19733600	Enhancers	Duodenum Mucosa	Duodenum
5	chr8:19728600-19733600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:19728800-19733200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr8:19728800-19733200	Weak transcription	Adipose Nuclei	Adipose
8	chr8:19729000-19733600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr8:19730000-19732600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:19730600-19732600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:19730600-19732600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr8:19730800-19732600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr8:19731000-19732600	Enhancers	Fetal Heart	heart
14	chr8:19731000-19732800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:19731800-19733200	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links