Variant report

Variant	rs28625702
Chromosome Location	chr15:40517412-40517413
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:40512180..40515201-chr15:40516014..40519122,3	K562	blood:
2	chr15:40517158..40519371-chr15:40520994..40522922,2	K562	blood:
3	chr15:40516209..40518290-chr15:40529455..40530984,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137843	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10152894	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs558937	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40453800-40525000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:40454800-40524200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:40455400-40530400	Weak transcription	Fetal Brain Female	brain
4	chr15:40455600-40518200	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr15:40455600-40522200	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr15:40455600-40530400	Weak transcription	Brain Germinal Matrix	brain
7	chr15:40456200-40524000	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:40456200-40524000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr15:40471400-40517600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr15:40471400-40524400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:40473200-40517800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:40473600-40525200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:40475000-40526400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr15:40475400-40522600	Strong transcription	Dnd41	blood
15	chr15:40481800-40524400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:40483000-40526200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:40485400-40527600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:40486600-40521000	Weak transcription	Placenta	Placenta
19	chr15:40487600-40518200	Strong transcription	H9 Cell Line	embryonic stem cell
20	chr15:40490800-40519000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:40491000-40526600	Weak transcription	Primary B cells from cord blood	blood
22	chr15:40491200-40527200	Strong transcription	Fetal Thymus	thymus
23	chr15:40491600-40524600	Weak transcription	Fetal Heart	heart
24	chr15:40491800-40523200	Weak transcription	Esophagus	oesophagus
25	chr15:40492800-40524000	Weak transcription	Fetal Kidney	kidney
26	chr15:40492800-40530800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:40493400-40527000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:40496600-40524800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:40497800-40517600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:40498800-40520600	Weak transcription	NHLF	lung
31	chr15:40502000-40521000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:40503400-40526600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:40504400-40521600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr15:40504400-40526400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:40506800-40524400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr15:40508200-40524600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:40509200-40517600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:40510000-40517600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:40510000-40522400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr15:40510400-40517600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:40510400-40518400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr15:40510800-40519600	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:40511000-40521000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:40512200-40517600	Strong transcription	Thymus	Thymus
45	chr15:40512600-40518200	Strong transcription	HUVEC	blood vessel
46	chr15:40513200-40531200	Weak transcription	NHDF-Ad	bronchial
47	chr15:40513400-40530800	Weak transcription	A549	lung
48	chr15:40513600-40517600	Weak transcription	Osteobl	bone
49	chr15:40513600-40521400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr15:40513600-40526200	Weak transcription	HSMM	muscle

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