Variant report

Variant	rs28625932
Chromosome Location	chr7:122137632-122137633
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10264588	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10277827	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11977727	1.00[AMR][1000 genomes]
rs11979634	1.00[AMR][1000 genomes]
rs11983436	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11983718	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56166405	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122047000-122155400	Weak transcription	Left Ventricle	heart
2	chr7:122115400-122140000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:122136400-122138000	Weak transcription	Gastric	stomach
4	chr7:122137400-122138200	Enhancers	Fetal Intestine Large	intestine
5	chr7:122137600-122138200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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